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MK473373.2__QBJ04474.1__X__00099
Bact-VirMK473373.2__QBJ04474.1__X__00099
Identity
- Accession:
- MK473373 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 2530172
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-86
Domain cluster:
rep: LC554890.1__BCG50277.1__X__00259__D5-72
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.75 | 49.0 | 5.18e-01 | 72.0% | 75.3% |
| 2qngA01 | 2.60.60.30 | Mainly Beta › Sandwich › Lipoxygenase-1 › sav2460 like domains | 0.74 | 61.0 | 4.80e-01 | 87.8% | 77.6% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.73 | 46.0 | 4.93e-01 | 72.0% | 73.6% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.70 | 47.0 | 3.94e-01 | 81.7% | 42.1% |
| 6muwJ00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.69 | 49.0 | 3.65e-01 | 74.4% | 91.2% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.69 | 49.0 | 4.48e-01 | 74.4% | 65.7% |
| 2knqA01 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.66 | 45.0 | 3.83e-01 | 85.4% | 43.9% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.66 | 52.0 | 5.28e-01 | 85.4% | 87.8% |
| 6u5uG07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.64 | 46.0 | 3.93e-01 | 75.6% | 80.3% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.63 | 40.0 | 3.96e-01 | 100.0% | 60.7% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 51.0 | 4.29e-01 | 92.7% | 52.9% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.62 | 47.0 | 4.73e-01 | 79.3% | 93.9% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 30.0 | 3.82e-01 | 82.9% | 78.0% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 52.0 | 4.31e-01 | 96.3% | 82.9% |
| 2o0pA00 | 3.20.170.20 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Protein of unknown function DUF952 | 0.59 | 47.0 | 4.27e-01 | 90.2% | 99.1% |
| 1zczA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.58 | 45.0 | 4.06e-01 | 92.7% | 59.0% |
| 6u5vB07 | 3.30.1120.100 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 41.0 | 3.56e-01 | 73.2% | 78.3% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 47.0 | 4.54e-01 | 89.0% | 90.2% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 50.0 | 3.98e-01 | 96.3% | 83.2% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 47.0 | 3.64e-01 | 92.7% | 55.9% |
| 6qpwA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 50.0 | 4.11e-01 | 100.0% | 72.5% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 48.0 | 3.65e-01 | 92.7% | 85.6% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 45.0 | 4.34e-01 | 89.0% | 88.3% |
| 3fm8A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 40.0 | 3.76e-01 | 74.4% | 89.8% |
| 6aiiA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 3.25e-01 | 98.8% | 70.3% |
| 3d4iB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.56 | 42.0 | 3.12e-01 | 84.1% | 98.4% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 31.0 | 3.33e-01 | 98.8% | 60.9% |
| 4gr4C02 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.55 | 43.0 | 2.86e-01 | 89.0% | 55.7% |
| 2q7dA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 39.0 | 2.97e-01 | 75.6% | 97.0% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 44.0 | 3.55e-01 | 89.0% | 85.9% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 45.0 | 3.15e-01 | 92.7% | 54.4% |
| 1lurA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 43.0 | 3.00e-01 | 93.9% | 42.8% |
| 2zdjA00 | 3.10.450.450 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.96e-01 | 84.1% | 85.3% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 31.0 | 3.34e-01 | 80.5% | 68.1% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 48.0 | 3.64e-01 | 100.0% | 55.2% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.52 | 44.0 | 3.59e-01 | 100.0% | 71.3% |
| 1sqhA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 3.59e-01 | 100.0% | 56.5% |
| 2p38A01 | 3.10.450.220 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 39.0 | 3.86e-01 | 84.1% | 97.8% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.50 | 43.0 | 3.62e-01 | 95.1% | 97.9% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3337910 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.74 | 53.0 | 5.00e-01 | 75.6% | 83.0% |
| 3178905 | 708.1.2.6 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA | 0.72 | 44.0 | 3.60e-01 | 93.9% | 34.5% |
| 3789849 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 50.0 | 5.78e-01 | 76.8% | 100.0% |
| 5016503 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.71 | 63.0 | 5.70e-01 | 97.6% | 84.5% |
| 5070550 | 806.1.1.1 ↗ | a+b four layers › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › Aldehyde ferredoxin oxidoreductase, N-terminal domain › AFOR_N | 0.69 | 57.0 | 4.49e-01 | 91.5% | 45.1% |
| 5059796 | 4326.1.1.0 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like | 0.69 | 46.0 | 4.92e-01 | 84.1% | 81.2% |
| 4277361 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.68 | 49.0 | 4.08e-01 | 75.6% | 62.9% |
| 4991489 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 37.0 | 4.03e-01 | 90.2% | 64.3% |
| 5034209 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 46.0 | 5.24e-01 | 75.6% | 100.0% |
| 3407355 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.65 | 49.0 | 3.89e-01 | 80.5% | 77.6% |
| 5033670 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.65 | 48.0 | 3.61e-01 | 79.3% | 52.4% |
| 3736791 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.65 | 53.0 | 4.26e-01 | 87.8% | 85.8% |
| 3625494 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.65 | 52.0 | 3.61e-01 | 87.8% | 30.7% |
| 3400659 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.65 | 47.0 | 3.82e-01 | 78.0% | 81.8% |
| 3588447 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.64 | 47.0 | 3.43e-01 | 79.3% | 59.2% |
| 5003530 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.63 | 52.0 | 4.36e-01 | 91.5% | 52.9% |
| 5020151 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.63 | 52.0 | 4.44e-01 | 92.7% | 55.6% |
| 5015865 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.63 | 52.0 | 4.37e-01 | 92.7% | 53.6% |
| 3221959 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.62 | 55.0 | 4.29e-01 | 96.3% | 61.8% |
| 3895928 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.62 | 47.0 | 3.74e-01 | 80.5% | 58.2% |
| 1877732 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.62 | 54.0 | 4.38e-01 | 96.3% | 67.7% |
| 5035835 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.62 | 35.0 | 3.99e-01 | 81.7% | 76.7% |
| 5059051 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.61 | 51.0 | 4.28e-01 | 92.7% | 53.6% |
| 4990487 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.61 | 37.0 | 3.99e-01 | 85.4% | 71.4% |
| 185024 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.60 | 53.0 | 4.07e-01 | 96.3% | 62.4% |
| 3957593 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.60 | 49.0 | 4.14e-01 | 92.7% | 58.6% |
| 2521302 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.57 | 47.0 | 3.68e-01 | 93.9% | 55.9% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.57 | 40.0 | 3.54e-01 | 73.2% | 70.4% |
| 1107912 | 71.1.1.7 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 | 0.56 | 48.0 | 3.65e-01 | 92.7% | 85.6% |
| 3438010 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 45.0 | 4.09e-01 | 92.7% | 75.0% |
| 3407530 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.56 | 46.0 | 3.86e-01 | 89.0% | 90.4% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 46.0 | 3.78e-01 | 87.8% | 93.6% |
| 3307205 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 47.0 | 4.21e-01 | 98.8% | 78.4% |
| 3976575 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.55 | 37.0 | 3.10e-01 | 76.8% | 41.5% |
| 3292092 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.55 | 45.0 | 3.80e-01 | 89.0% | 91.8% |
| 2390064 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.54 | 40.0 | 3.13e-01 | 80.5% | 36.3% |
| 3738030 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.54 | 44.0 | 3.73e-01 | 89.0% | 91.1% |
| 3022412 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.54 | 44.0 | 3.67e-01 | 89.0% | 88.7% |
| 4544603 | 3523.1.1.2 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N | 0.52 | 39.0 | 2.94e-01 | 81.7% | 50.2% |
| 4139105 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.51 | 34.0 | 2.84e-01 | 91.5% | 33.5% |
| 4990182 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.51 | 39.0 | 4.07e-01 | 82.9% | 100.0% |
| 4459482 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.51 | 41.0 | 3.17e-01 | 93.9% | 64.7% |
| 4351891 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.51 | 43.0 | 3.11e-01 | 96.3% | 68.8% |