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MK473373.2__QBJ04478.1__X__00095

Bact-Vir

MK473373.2__QBJ04478.1__X__00095

Identity

Accession:
MK473373 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.74 49.0 3.69e-01 70.0% 31.3%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 49.0 4.33e-01 76.7% 70.8%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.68 46.0 2.65e-01 70.0% 7.9%
1l5jA02 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.67 45.0 3.11e-01 70.0% 85.5%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.67 53.0 4.33e-01 86.7% 64.3%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 53.0 3.35e-01 85.0% 90.1%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 46.0 4.13e-01 75.0% 71.4%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 51.0 3.90e-01 86.7% 96.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.65 52.0 4.03e-01 100.0% 39.4%
4p2bA04 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.64 43.0 3.93e-01 70.0% 100.0%
1qtqA02 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 43.0 3.81e-01 71.7% 95.6%
7asgA02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.63 54.0 4.30e-01 95.0% 70.6%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.63 42.0 4.17e-01 70.0% 96.9%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 53.0 3.45e-01 100.0% 31.8%
3dr2A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 47.0 3.03e-01 83.3% 84.6%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 48.0 3.06e-01 86.7% 90.9%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 49.0 3.11e-01 86.7% 87.6%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.61 45.0 3.85e-01 80.0% 71.3%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 41.0 3.92e-01 71.7% 94.5%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 51.0 4.18e-01 100.0% 52.4%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 51.0 3.31e-01 100.0% 68.3%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.60 48.0 4.14e-01 95.0% 83.7%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 48.0 4.51e-01 93.3% 93.4%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 4.12e-01 100.0% 85.5%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.58 47.0 3.11e-01 95.0% 94.7%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.58 47.0 3.67e-01 93.3% 40.0%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.57 48.0 3.64e-01 98.3% 48.4%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.56 47.0 3.37e-01 96.7% 93.7%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.63e-01 100.0% 69.6%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 46.0 4.03e-01 98.3% 81.4%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.55 43.0 3.16e-01 86.7% 80.0%
2uzzA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.55 47.0 3.38e-01 98.3% 75.4%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.88e-01 93.3% 93.3%
1mveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 2.85e-01 86.7% 52.5%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 47.0 2.95e-01 98.3% 39.5%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 40.0 2.58e-01 85.0% 15.7%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 47.0 3.04e-01 100.0% 40.8%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.09e-01 98.3% 48.1%
3f0zA01 3.30.310.260 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 42.0 3.50e-01 90.0% 78.6%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 3.41e-01 100.0% 48.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.24e-01 86.7% 58.3%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.52 41.0 4.03e-01 98.3% 80.0%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.00e-01 93.3% 77.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3772701 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 51.0 3.95e-01 75.0% 47.4%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 63.0 4.40e-01 100.0% 43.1%
3394097 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.71 48.0 4.09e-01 71.7% 76.0%
3899689 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.70 48.0 3.41e-01 71.7% 35.6%
3518153 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.70 50.0 4.07e-01 75.0% 78.2%
3057047 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.70 51.0 4.89e-01 100.0% 67.1%
3937784 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 49.0 3.89e-01 75.0% 52.3%
4325842 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.69 48.0 3.15e-01 73.3% 31.0%
None 0.68 49.0 4.11e-01 76.7% 62.9%
3412282 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.68 48.0 3.87e-01 75.0% 56.7%
4106342 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.68 48.0 4.23e-01 75.0% 73.3%
4602979 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.68 47.0 3.46e-01 73.3% 40.5%
3801304 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 47.0 3.60e-01 75.0% 60.7%
None 0.67 47.0 3.74e-01 75.0% 50.8%
3565424 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 47.0 3.76e-01 75.0% 62.4%
3907329 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 47.0 3.73e-01 75.0% 50.8%
4492832 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.67 46.0 3.43e-01 73.3% 42.6%
3386570 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.66 46.0 3.57e-01 73.3% 47.8%
3969735 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 44.0 4.24e-01 70.0% 94.3%
3497738 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 47.0 3.72e-01 76.7% 49.2%
3934170 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.65 52.0 4.49e-01 88.3% 82.1%
3740110 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.65 50.0 4.06e-01 86.7% 72.0%
4297075 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.65 46.0 3.52e-01 73.3% 49.6%
4370909 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.65 51.0 4.52e-01 86.7% 84.4%
3532957 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 47.0 3.62e-01 75.0% 47.1%
4037779 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.65 50.0 4.33e-01 86.7% 80.0%
None 0.65 46.0 3.88e-01 75.0% 62.9%
3630369 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.65 46.0 3.63e-01 75.0% 48.9%
3483766 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 46.0 3.89e-01 75.0% 75.0%
3816337 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.65 46.0 4.75e-01 76.7% 94.4%
3281893 71.2.1.1 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.64 52.0 3.72e-01 91.7% 42.2%
3218627 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 49.0 3.41e-01 98.3% 24.2%
3296246 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.64 52.0 4.10e-01 98.3% 95.2%
4078246 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.64 48.0 4.48e-01 81.7% 78.7%
3388541 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 50.0 4.35e-01 88.3% 83.2%
3602904 296.1.1.1 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.63 44.0 3.39e-01 73.3% 63.7%
5008254 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 50.0 4.78e-01 90.0% 95.7%
169136 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.62 47.0 3.03e-01 83.3% 84.6%
3509362 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.62 44.0 3.87e-01 76.7% 69.1%
3230955 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 53.0 3.56e-01 100.0% 29.0%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 47.0 3.21e-01 96.7% 20.8%
4982334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.60e-01 85.0% 85.5%
3223252 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 47.0 3.17e-01 95.0% 20.4%
1688207 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.61 47.0 3.03e-01 86.7% 90.9%
3232437 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 4.03e-01 98.3% 50.9%
4961310 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.59 46.0 3.02e-01 86.7% 69.3%
3225229 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 47.0 3.22e-01 96.7% 22.0%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 48.0 3.24e-01 98.3% 23.0%
3945059 9.1.1.6 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.58 42.0 3.65e-01 81.7% 93.3%
3242230 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 47.0 3.37e-01 98.3% 27.9%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.58 44.0 3.86e-01 85.0% 80.0%
4890150 5.1.4.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.58 47.0 3.06e-01 95.0% 89.8%
4389625 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.58 40.0 4.19e-01 76.7% 85.5%
3996256 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.57 43.0 4.14e-01 85.0% 91.4%
3172856 5.1.4.575 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.56 49.0 3.21e-01 100.0% 40.7%
3502259 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 46.0 3.74e-01 96.7% 88.0%
3690503 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.56 47.0 3.97e-01 100.0% 66.1%
262552 52.1.1.1 beta sandwiches › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › E2 regulatory, transactivation domain › PPV_E2_N 0.56 42.0 3.62e-01 83.3% 63.6%
3928614 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 44.0 3.31e-01 91.7% 49.7%
3704121 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 37.0 3.77e-01 90.0% 70.7%
3508120 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.55 46.0 3.80e-01 98.3% 79.1%
4056475 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.53 46.0 3.90e-01 100.0% 80.6%
3724346 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.81e-01 91.7% 91.9%
4431947 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.52 45.0 2.86e-01 100.0% 43.4%
3583597 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.54e-01 88.3% 60.0%
3843361 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.51 41.0 2.63e-01 96.7% 93.6%