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MK493321.1__QBQ74925.1__RW110999_047__00040
Bact-VirMK493321.1__QBQ74925.1__RW110999_047__00040
Identity
- Accession:
- MK493321 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Shandvirus›
Cyanophage_S-RIM4
TaxID: 2530169
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 59-277
Domain cluster:
rep: MN698239.1__QGZ17699.1__HTVC023P_gp70__00070__D48-308
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21722.5 best | Gly_rich_2 | 31.1 | 3.40e-07 | 88.6% | 97.8% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.60 | 24.0 | 3.24e-01 | 100.0% | 65.8% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 21.0 | 3.06e-01 | 86.8% | 72.0% |
| 3rb5A02 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.54 | 22.0 | 2.88e-01 | 97.7% | 63.2% |
| 1sfpA00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.51 | 24.0 | 3.28e-01 | 97.7% | 87.4% |
| 1sppB00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.50 | 24.0 | 3.27e-01 | 97.7% | 86.6% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 24.0 | 3.25e-01 | 96.8% | 86.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1276801 | 10.11.1.1 ↗ | beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain › TPK_B1_binding | 0.64 | 24.0 | 3.98e-01 | 98.6% | 91.8% |
| 3933157 | 11.1.1.1085 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N | 0.57 | 27.0 | 3.98e-01 | 99.1% | 99.0% |
| 5077191 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.56 | 27.0 | 3.88e-01 | 97.3% | 99.0% |
| 3599140 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 26.0 | 3.76e-01 | 98.6% | 100.0% |
| 5083101 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 29.0 | 3.96e-01 | 99.5% | 98.3% |
| 5039150 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 28.0 | 3.79e-01 | 98.6% | 97.4% |
| 3241208 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 26.0 | 3.53e-01 | 97.7% | 95.5% |
| 5042299 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 24.0 | 3.28e-01 | 95.9% | 89.5% |