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MK493321.1__QBQ74980.1__RW110999_102__00095

Bact-Vir

MK493321.1__QBQ74980.1__RW110999_102__00095

Identity

Accession:
MK493321 ↗
Kingdom:
phage

Quality

60.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Shandvirus› Cyanophage_S-RIM4

TaxID: 2530169

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-54
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_186_prodigal-single.1__X__X__00004__D1-56
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18454.8 best Mtd_N 56.7 2.50e-15 72.2% 100.0%
D2 medium residues 160-222_951-1022
PDB
D3 medium residues 223-287
PDB
D4 medium residues 288-351
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.90 65.0 7.42e-01 87.5% 100.0%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.84 60.0 5.21e-01 79.7% 50.5%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.83 62.0 6.88e-01 90.6% 100.0%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.82 63.0 5.97e-01 89.1% 69.9%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.76 52.0 5.94e-01 75.0% 100.0%
1aiwA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.71 57.0 5.79e-01 85.9% 91.9%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.68 52.0 5.38e-01 82.8% 98.4%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 38.0 3.56e-01 79.7% 51.2%
4maaA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 3.31e-01 95.3% 92.4%
4dzhA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.52 43.0 3.46e-01 93.8% 73.5%
4m0hA01 2.60.120.1440 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 3.10e-01 82.8% 43.9%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.51 43.0 3.86e-01 93.8% 71.4%
3iteB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 35.0 2.27e-01 78.1% 78.7%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009007 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.88 63.0 7.11e-01 81.2% 96.0%
1322863 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 59.0 6.89e-01 76.6% 100.0%
5026481 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.86 64.0 7.16e-01 90.6% 100.0%
3998974 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.84 43.0 5.59e-01 76.6% 91.4%
4307941 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 65.0 6.80e-01 81.2% 100.0%
1322862 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.84 59.0 6.77e-01 78.1% 97.9%
3972100 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 68.0 6.81e-01 92.2% 86.2%
1291025 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.82 63.0 5.97e-01 89.1% 69.9%
4233290 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.82 61.0 6.77e-01 85.9% 100.0%
2389402 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.81 63.0 6.76e-01 92.2% 96.3%
4009008 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 62.0 6.66e-01 81.2% 100.0%
3976685 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 63.0 6.86e-01 82.8% 100.0%
3971347 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 63.0 6.64e-01 84.4% 91.4%
1694867 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.80 62.0 6.75e-01 84.4% 98.1%
4110715 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.79 63.0 6.58e-01 85.9% 91.5%
4026053 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 48.0 6.00e-01 73.4% 100.0%
3579158 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.78 40.0 5.22e-01 78.1% 91.4%
3975892 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 56.0 5.99e-01 76.6% 100.0%
4149799 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.76 56.0 6.21e-01 78.1% 100.0%
4009012 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.75 63.0 6.36e-01 92.2% 90.6%
8553 64.3.1.3 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.71 57.0 5.79e-01 85.9% 91.9%
3515805 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.70 41.0 5.03e-01 78.1% 95.0%
3746950 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.69 38.0 4.66e-01 79.7% 85.0%
3241120 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.68 50.0 5.05e-01 78.1% 80.0%
1002430 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.68 52.0 5.38e-01 82.8% 98.4%
2736862 64.3.1.0 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.65 53.0 5.28e-01 95.3% 91.2%
2736861 64.3.1.1 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.64 51.0 5.09e-01 92.2% 85.1%
5042815 239.1.1.15 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.54 40.0 3.74e-01 79.7% 73.8%
D5 medium residues 352-450_1070-1115_1161-1195
PDB
D6 medium residues 539-561_1259-1350
PDB
Domain cluster: representative
D7 medium residues 593-655
PDB
Domain cluster: rep: NC_023584.1__YP_009007946.1__S-MbCM100_089__00089__D594-646
D8 medium residues 882-950_1489-1587
PDB