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MK504442.1__QBJ03297.1__A3SAC12_0008__00008

Bact-Vir

MK504442.1__QBJ03297.1__A3SAC12_0008__00008

Identity

Accession:
MK504442 ↗
Kingdom:
phage

Quality

79.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_3-SAC12

TaxID: 2510940

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-58
PDB
Domain cluster: rep: IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452__D259-301
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 34.0 3.20e-08 93.8% 100.0%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.91 81.0 7.18e-01 100.0% 70.1%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.89 78.0 7.97e-01 97.9% 100.0%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.80 66.0 6.57e-01 100.0% 90.2%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.80 66.0 6.69e-01 100.0% 93.8%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 68.0 5.99e-01 100.0% 65.8%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.77 65.0 6.56e-01 100.0% 95.9%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.77 63.0 6.29e-01 100.0% 92.0%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 60.0 4.91e-01 100.0% 58.0%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 44.0 2.97e-01 100.0% 22.9%
2c2iA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.06e-01 100.0% 60.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838194 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 84.0 8.69e-01 97.9% 100.0%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 84.0 7.75e-01 100.0% 76.7%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.94 86.0 6.25e-01 100.0% 41.7%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 83.0 7.88e-01 100.0% 83.6%
2124918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 5.99e-01 100.0% 36.8%
3501971 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 82.0 7.56e-01 100.0% 76.7%
4448562 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 78.0 7.46e-01 95.8% 80.0%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 81.0 7.05e-01 100.0% 65.7%
4680476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 83.0 7.20e-01 100.0% 67.1%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 8.11e-01 100.0% 90.9%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 81.0 7.69e-01 100.0% 83.6%
4177991 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 8.11e-01 100.0% 89.1%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 4.97e-01 100.0% 17.4%
3165071 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 82.0 7.80e-01 100.0% 85.5%
3974521 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 79.0 7.31e-01 100.0% 76.7%
2035755 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 80.0 6.15e-01 100.0% 46.5%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 77.0 7.64e-01 100.0% 90.0%
3359799 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.90 81.0 5.78e-01 100.0% 39.8%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.90 80.0 7.40e-01 100.0% 78.3%
4404011 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 78.0 6.82e-01 100.0% 65.7%
3985839 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 78.0 6.83e-01 100.0% 65.7%
4118675 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 76.0 7.82e-01 97.9% 100.0%
2644065 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.88 80.0 7.73e-01 100.0% 92.5%
3303205 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 81.0 7.44e-01 100.0% 81.7%
3165082 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 7.81e-01 100.0% 94.0%
4277578 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 78.0 7.69e-01 100.0% 94.0%
4176074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 79.0 7.29e-01 100.0% 90.0%
4489502 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 78.0 7.25e-01 100.0% 96.7%
3299119 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.86 77.0 5.63e-01 100.0% 39.2%
3666767 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.86 77.0 5.90e-01 100.0% 47.6%
3338947 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.86 78.0 6.99e-01 100.0% 73.8%
3964929 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 70.0 7.23e-01 95.8% 97.8%
3190144 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 74.0 7.43e-01 100.0% 95.9%
1178373 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 75.0 6.85e-01 100.0% 74.6%
3675929 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 74.0 7.11e-01 100.0% 83.6%
2968802 101.15.1.11 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP 0.85 76.0 5.39e-01 100.0% 36.2%
3355076 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.84 75.0 6.96e-01 100.0% 81.7%
3319482 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.84 75.0 5.46e-01 100.0% 39.2%
4019982 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.84 74.0 6.94e-01 100.0% 81.7%
3837369 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.84 75.0 5.59e-01 100.0% 42.6%
3305689 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.84 74.0 5.28e-01 100.0% 35.0%
3309886 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.84 73.0 5.18e-01 100.0% 33.8%
3636417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.83 74.0 7.18e-01 100.0% 94.3%
4047213 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 71.0 6.89e-01 100.0% 94.5%
3604763 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 68.0 5.65e-01 100.0% 52.9%
3654744 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.81 72.0 5.95e-01 100.0% 56.5%
3691772 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 70.0 6.75e-01 100.0% 85.5%
3445690 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.81 70.0 6.25e-01 100.0% 75.7%
4662825 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 71.0 6.44e-01 100.0% 75.4%
3248434 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 71.0 7.05e-01 100.0% 100.0%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 71.0 6.85e-01 100.0% 89.1%
4492966 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 68.0 6.55e-01 100.0% 85.5%
3181142 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 65.0 6.51e-01 93.8% 98.0%
2124476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 68.0 4.95e-01 100.0% 35.6%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.77 68.0 6.34e-01 100.0% 88.3%
3269916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 63.0 5.94e-01 97.9% 81.7%
3240632 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.75 60.0 6.18e-01 97.9% 97.8%
3982705 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.70 63.0 5.01e-01 100.0% 54.3%
3164837 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.70 62.0 5.20e-01 100.0% 63.7%
1649977 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.68 60.0 4.87e-01 100.0% 56.7%
4292036 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.64 50.0 4.78e-01 93.8% 88.3%