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MK504442.1__QBJ03303.1__A3SAC12_0014__00014

Bact-Vir

MK504442.1__QBJ03303.1__A3SAC12_0014__00014

Identity

Accession:
MK504442 ↗
Kingdom:
phage

Quality

63.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_3-SAC12

TaxID: 2510940

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-142
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 3.92e-01 100.0% 83.1%
5mkiH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 33.0 3.80e-01 100.0% 80.3%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.55 45.0 4.48e-01 100.0% 85.0%
2pa8D01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.51 29.0 3.08e-01 71.0% 62.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083758 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.66 32.0 3.69e-01 99.0% 61.3%
4957561 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.58 48.0 4.79e-01 100.0% 87.6%
3280543 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.55 43.0 3.31e-01 84.0% 95.1%
3694587 3409.1.1.1 ↗ a+b duplicates or obligate multimers › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › Vacuolar protein sorting-associated protein 30 BARA domain › APG6 0.54 40.0 3.13e-01 80.0% 91.7%
3906315 3914.1.1.1 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin 0.54 39.0 2.39e-01 75.0% 14.2%
1097266 3743.1.1.1 ↗ a+b two layers › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › L,D-transpeptidase C-terminal domain › Ldt_C 0.53 31.0 3.54e-01 90.0% 78.6%
4937852 244.3.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C 0.51 42.0 4.41e-01 100.0% 100.0%