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MK504442.1__QBJ03304.1__A3SAC12_0015__00015
Bact-VirMK504442.1__QBJ03304.1__A3SAC12_0015__00015
Identity
- Accession:
- MK504442 ↗
- Kingdom:
- phage
Quality
67.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-79
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 57.0 | 4.88e-01 | 80.3% | 89.3% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.70 | 50.0 | 4.28e-01 | 77.3% | 48.5% |
| 3t98B00 | 6.10.140.1350 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 50.0 | 4.50e-01 | 74.2% | 86.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.69 | 47.0 | 4.65e-01 | 71.2% | 67.6% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.68 | 46.0 | 3.83e-01 | 71.2% | 44.2% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 46.0 | 4.71e-01 | 71.2% | 78.1% |
| 3zkvA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.67 | 51.0 | 2.85e-01 | 81.8% | 6.9% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 39.0 | 2.71e-01 | 77.3% | 60.8% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.53 | 44.0 | 4.10e-01 | 93.9% | 89.3% |
| 4xukA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 40.0 | 2.67e-01 | 83.3% | 51.5% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 39.0 | 3.73e-01 | 83.3% | 75.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781441 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.82 | 56.0 | 4.94e-01 | 71.2% | 51.6% |
| 3611213 | 386.1.1.227 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Dzip-like_N | 0.76 | 59.0 | 4.37e-01 | 81.8% | 43.2% |
| 3934925 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.71 | 53.0 | 4.96e-01 | 78.8% | 98.8% |
| 3563679 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 56.0 | 4.73e-01 | 84.8% | 87.6% |
| 3183184 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.70 | 51.0 | 2.69e-01 | 75.8% | 9.6% |
| 2572867 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.70 | 50.0 | 4.17e-01 | 77.3% | 45.0% |
| 3503335 | 604.1.1.124 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 | 0.66 | 50.0 | 4.18e-01 | 81.8% | 93.9% |
| 4424957 | 3804.1.1.0 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain | 0.59 | 49.0 | 3.53e-01 | 89.4% | 70.0% |
| 3406963 | 4177.1.1.1 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH | 0.58 | 44.0 | 2.79e-01 | 78.8% | 17.3% |
| 3924919 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.58 | 42.0 | 3.47e-01 | 75.8% | 47.4% |
| 3173138 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.57 | 39.0 | 3.59e-01 | 72.7% | 64.4% |
| 4379548 | 102.1.1.42 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNAseD_HRDC_C | 0.52 | 39.0 | 3.78e-01 | 83.3% | 78.5% |