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MK504443.1__QBJ03431.1__B521_0081__00081

Bact-Vir

MK504443.1__QBJ03431.1__B521_0081__00081

Identity

Accession:
MK504443 ↗
Kingdom:
phage

Quality

80.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Tybeckvirus› Lactobacillus_phage_521B

TaxID: 2510942

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
D2 high residues 85-170
PDB
Domain cluster: rep: NC_048753.1__YP_009844057.1__HWC09_gp124__00057__D529-612
D3 high residues 274-408
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 28.0 4.01e-01 98.5% 86.7%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 41.0 3.82e-01 91.9% 51.2%
2yfoA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 43.0 5.00e-01 96.3% 99.0%
2xn2A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 41.0 4.69e-01 97.0% 99.0%
3fw6A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 44.0 4.73e-01 97.8% 90.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 26.0 3.91e-01 94.8% 98.2%
6phxA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 41.0 4.71e-01 98.5% 100.0%
2y2wD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 46.0 4.76e-01 97.0% 86.8%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 48.0 4.92e-01 97.8% 90.2%
3mi6B03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 42.0 4.72e-01 98.5% 99.0%
1h7zA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.57 51.0 4.61e-01 100.0% 98.4%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 41.0 4.45e-01 94.1% 89.4%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.57 26.0 3.51e-01 100.0% 90.0%
4i0nA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.55 49.0 3.98e-01 100.0% 78.8%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 34.0 3.73e-01 98.5% 81.6%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 46.0 3.59e-01 100.0% 76.2%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 46.0 3.63e-01 100.0% 73.4%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 45.0 3.50e-01 99.3% 97.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3549674 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 42.0 4.94e-01 100.0% 98.9%
5037699 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 44.0 5.00e-01 95.6% 98.0%
3290942 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 39.0 4.28e-01 100.0% 81.0%
4316811 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.60 41.0 4.77e-01 98.5% 100.0%
3938374 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.59 44.0 4.93e-01 97.8% 100.0%
390053 12.1.1.27 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_36C 0.57 42.0 4.72e-01 98.5% 99.0%
3504134 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.57 46.0 4.93e-01 97.8% 100.0%
3786134 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.57 43.0 4.22e-01 100.0% 73.1%
3170078 11.1.1.646 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N 0.57 40.0 4.06e-01 100.0% 72.6%
4024291 11.1.1.105 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Coatamer_beta_C 0.56 38.0 3.95e-01 99.3% 73.1%
184563 12.1.1.22 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.56 41.0 4.39e-01 98.5% 89.7%
3599647 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.11e-01 86.7% 94.3%
4942093 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 47.0 4.24e-01 98.5% 95.3%
4932771 11.1.1.1128 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27408 0.52 47.0 4.60e-01 100.0% 89.3%
3980016 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.51 41.0 4.06e-01 85.2% 98.6%