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MK504444.1__QBJ03553.1__UCC3521_0015__00015

Bact-Vir

MK504444.1__QBJ03553.1__UCC3521_0015__00015

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 4.00e-01 74.0% 77.9%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 4.39e-01 74.0% 79.3%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 47.0 3.68e-01 74.0% 69.7%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.65 46.0 3.74e-01 74.0% 97.8%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 4.27e-01 74.0% 80.7%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 46.0 2.94e-01 76.7% 85.5%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 4.18e-01 74.0% 79.6%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.63 47.0 4.10e-01 79.5% 83.0%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.63 47.0 4.22e-01 79.5% 85.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 47.0 3.05e-01 78.1% 87.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 3.61e-01 98.6% 94.2%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 54.0 4.59e-01 98.6% 84.7%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 42.0 3.47e-01 71.2% 100.0%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 3.62e-01 84.9% 65.0%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 4.22e-01 74.0% 83.7%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.61 35.0 3.90e-01 86.3% 73.2%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 42.0 3.58e-01 75.3% 98.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.60 43.0 3.70e-01 76.7% 92.6%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 44.0 4.22e-01 80.8% 95.5%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 48.0 4.75e-01 87.7% 98.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 4.05e-01 75.3% 81.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 5.02e-01 86.3% 100.0%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.59 44.0 3.39e-01 80.8% 97.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.69e-01 75.3% 66.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.58 44.0 3.74e-01 84.9% 82.7%
3fe4B00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.57 40.0 2.87e-01 75.3% 56.7%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 41.0 3.41e-01 79.5% 100.0%
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 39.0 3.20e-01 71.2% 97.8%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.82e-01 79.5% 93.3%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.91e-01 86.3% 40.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.80e-01 93.2% 100.0%
1yuaA01 3.30.65.10 Alpha Beta › 2-Layer Sandwich › Bacterial Topoisomerase I; domain 1 › Bacterial Topoisomerase I, domain 1 0.56 38.0 4.04e-01 71.2% 82.8%
1v73A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 38.0 2.51e-01 71.2% 76.7%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.87e-01 87.7% 46.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.83e-01 94.5% 70.8%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 4.03e-01 72.6% 89.2%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 48.0 3.75e-01 100.0% 79.9%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 2.75e-01 89.0% 59.4%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.55 38.0 3.68e-01 72.6% 100.0%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 3.79e-01 78.1% 81.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.39e-01 90.4% 94.7%
4bhrA00 3.30.1300.70 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 37.0 3.59e-01 71.2% 81.5%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.09e-01 97.3% 75.3%
6gpkA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.53 39.0 3.47e-01 79.5% 56.0%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 45.0 3.25e-01 95.9% 71.9%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.52 35.0 2.83e-01 71.2% 93.8%
2fvgA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 39.0 3.93e-01 84.9% 100.0%
4iauA02 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.50 37.0 3.59e-01 97.3% 71.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.96e-01 80.8% 100.0%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.92e-01 80.8% 100.0%
4972823 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.87e-01 80.8% 100.0%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 49.0 5.77e-01 80.8% 100.0%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.74e-01 83.6% 98.2%
3468148 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 63.0 4.64e-01 98.6% 76.4%
5002449 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.49e-01 83.6% 94.5%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 63.0 4.14e-01 100.0% 70.9%
3216916 220.1.1.23 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ICAP-1_inte_bdg 0.70 50.0 3.92e-01 75.3% 80.7%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.49e-01 86.3% 100.0%
4935681 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.50e-01 84.9% 100.0%
4957409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.29e-01 83.6% 100.0%
3786392 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 50.0 3.23e-01 78.1% 83.3%
3890922 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.67 47.0 4.20e-01 74.0% 73.3%
4938404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.33e-01 86.3% 98.2%
3434504 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.66 49.0 3.15e-01 78.1% 82.5%
3701480 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 47.0 3.95e-01 75.3% 56.0%
3553012 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.66 49.0 3.11e-01 78.1% 77.3%
3561808 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.64 54.0 4.01e-01 93.2% 84.2%
4113514 304.51.1.6 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.64 56.0 4.08e-01 98.6% 99.5%
3233232 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.64 36.0 4.27e-01 82.2% 82.0%
4078246 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.63 46.0 4.63e-01 78.1% 98.7%
3808690 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 54.0 3.69e-01 98.6% 92.1%
4011842 9.4.1.4 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 0.61 44.0 3.58e-01 78.1% 89.0%
3239485 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 49.0 4.09e-01 90.4% 60.8%
None — 0.60 43.0 3.59e-01 75.3% 56.9%
4020598 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.60 44.0 2.70e-01 78.1% 27.5%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.43e-01 86.3% 81.4%
None — 0.58 43.0 2.85e-01 78.1% 89.0%
3218627 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 47.0 3.44e-01 91.8% 31.6%
3282992 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.58 41.0 3.56e-01 74.0% 54.6%
3704121 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.58 34.0 3.73e-01 72.6% 72.4%
5012193 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.36e-01 90.4% 50.5%
3420808 1.1.1.20 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.56 40.0 2.47e-01 74.0% 14.7%
3210875 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 45.0 3.16e-01 91.8% 28.1%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 38.0 3.48e-01 72.6% 63.8%
4889001 5.1.4.280 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.56 45.0 2.92e-01 87.7% 33.7%
4242957 2003.1.10.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.55 41.0 3.17e-01 79.5% 59.4%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 47.0 3.95e-01 100.0% 94.6%
3597338 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 3.28e-01 91.8% 90.7%
3166720 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.62e-01 89.0% 22.3%
3643520 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.53 44.0 2.96e-01 94.5% 74.9%
3775858 5.1.4.547 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF4800, NBCH_WD40 0.53 47.0 2.99e-01 100.0% 79.0%
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.25e-01 78.1% 95.0%
3523834 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 46.0 2.92e-01 97.3% 47.7%
3657386 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.53 37.0 2.95e-01 74.0% 41.4%
4133709 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 44.0 3.24e-01 94.5% 85.9%
4129145 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.52 44.0 3.05e-01 97.3% 44.4%
3238362 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.02e-01 100.0% 81.3%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.52 36.0 3.19e-01 75.3% 93.3%
3991137 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 45.0 2.91e-01 97.3% 64.7%
3625037 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 36.0 2.95e-01 72.6% 90.4%
3423006 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.51 36.0 2.84e-01 74.0% 37.0%
4990499 2003.1.5.32 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.50 38.0 2.66e-01 84.9% 30.9%
3488366 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.50 42.0 3.44e-01 100.0% 79.4%