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MK504444.1__QBJ03555.1__UCC3521_0017__00017

Bact-Vir

MK504444.1__QBJ03555.1__UCC3521_0017__00017

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.75 51.0 4.14e-01 98.4% 38.5%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 45.0 4.25e-01 100.0% 52.6%
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.66 58.0 4.23e-01 100.0% 88.5%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 47.0 4.23e-01 100.0% 56.3%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 49.0 3.82e-01 100.0% 39.4%
3arxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 42.0 3.52e-01 100.0% 39.6%
1zxqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 48.0 4.04e-01 100.0% 48.6%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 51.0 4.12e-01 100.0% 47.8%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.62 50.0 4.41e-01 100.0% 58.6%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 46.0 3.90e-01 100.0% 47.2%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.62 45.0 3.77e-01 100.0% 45.8%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 49.0 4.03e-01 100.0% 49.1%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 45.0 3.96e-01 79.7% 95.0%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 54.0 4.16e-01 100.0% 49.3%
4p02B01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 3.34e-01 100.0% 36.8%
2l0dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.67e-01 100.0% 46.5%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.45e-01 71.9% 65.3%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 47.0 4.10e-01 100.0% 99.1%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.57 40.0 3.51e-01 73.4% 85.4%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.57 39.0 3.42e-01 71.9% 96.0%
3encA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 44.0 4.10e-01 82.8% 92.4%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.56 38.0 3.42e-01 71.9% 61.7%
3ejjX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.68e-01 100.0% 54.7%
3d7aA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.55 48.0 3.84e-01 100.0% 83.8%
1osyA00 2.60.40.1790 Mainly Beta › Sandwich › Immunoglobulin-like › Fungal immunomodulatory protein Fve 0.55 42.0 3.53e-01 100.0% 46.5%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.33e-01 89.1% 48.4%
4fa8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.70e-01 87.5% 56.7%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.54 47.0 3.65e-01 100.0% 75.5%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 41.0 3.68e-01 85.9% 82.3%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.53e-01 78.1% 100.0%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.53 39.0 3.43e-01 92.2% 50.5%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 3.06e-01 82.8% 56.1%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 2.90e-01 100.0% 30.4%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.87e-01 95.3% 73.3%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.30e-01 70.3% 69.1%
5joeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.28e-01 100.0% 52.2%
1s48A04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 45.0 3.80e-01 100.0% 69.4%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.51 45.0 3.56e-01 100.0% 76.1%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.51 45.0 3.72e-01 100.0% 89.0%
4fhdA02 3.80.30.30 Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › 0.51 39.0 2.67e-01 82.8% 49.8%
3wuzA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.55e-01 100.0% 60.0%
2fd6U02 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.50 44.0 4.03e-01 100.0% 83.7%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.43e-01 100.0% 52.3%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.50 43.0 3.20e-01 100.0% 37.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5050380 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 47.0 4.22e-01 100.0% 50.0%
5008037 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.70 52.0 4.23e-01 81.2% 95.2%
3477628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 47.0 3.85e-01 100.0% 40.0%
3572286 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.66 42.0 3.80e-01 100.0% 48.2%
4969171 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 46.0 4.13e-01 100.0% 53.3%
3461175 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 45.0 4.08e-01 100.0% 55.8%
5003527 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.60 53.0 4.06e-01 100.0% 46.0%
3703566 306.10.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.60 45.0 3.75e-01 82.8% 90.8%
3607007 306.5.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.59 45.0 3.69e-01 82.8% 90.0%
4928347 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.59 52.0 3.79e-01 100.0% 66.3%
4033865 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.58 51.0 3.97e-01 100.0% 47.6%
3252961 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 37.0 3.87e-01 85.9% 72.4%
3865999 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 46.0 3.49e-01 100.0% 37.9%
3488179 3501.1.1.1 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.57 45.0 4.01e-01 84.4% 93.3%
3934202 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.57 50.0 3.87e-01 100.0% 82.1%
5033418 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.57 44.0 4.28e-01 82.8% 95.7%
1505699 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.56 40.0 3.69e-01 84.4% 56.3%
5002351 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.56 45.0 2.81e-01 89.1% 17.6%
3492512 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.56 49.0 3.14e-01 100.0% 64.7%
3838723 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 49.0 3.64e-01 100.0% 41.2%
3519553 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 38.0 3.30e-01 87.5% 42.6%
3896820 304.48.1.83 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › SGT1 0.55 46.0 3.38e-01 98.4% 52.6%
3231858 304.8.1.72 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.54 48.0 4.15e-01 100.0% 93.0%
4182510 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.54 37.0 3.38e-01 71.9% 74.4%
4115819 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.54 46.0 3.48e-01 100.0% 57.1%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 47.0 4.31e-01 98.4% 81.2%
3744247 101.1.11.112 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › SGT1 0.53 45.0 3.25e-01 98.4% 50.3%
4011217 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.53 42.0 3.52e-01 89.1% 77.4%
3935475 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 3.10e-01 100.0% 24.6%
3677440 862.1.1.11 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R 0.52 46.0 3.12e-01 100.0% 66.9%
3895928 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 43.0 3.35e-01 100.0% 41.8%
3496969 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.22e-01 100.0% 44.3%
3481499 223.1.1.119 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_2 0.52 45.0 3.43e-01 98.4% 99.4%
3488300 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 39.0 3.30e-01 100.0% 48.6%
4056401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 46.0 4.32e-01 100.0% 80.0%
4810251 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 45.0 3.03e-01 100.0% 90.3%
3834262 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.51 40.0 3.20e-01 87.5% 62.9%
3219320 11.1.1.859 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set, Ig_3 0.51 44.0 3.03e-01 100.0% 27.2%
3244813 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.51 45.0 3.49e-01 100.0% 45.9%
3993999 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 38.0 3.01e-01 100.0% 36.6%
3357795 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 37.0 2.59e-01 79.7% 47.8%
3907708 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.64e-01 100.0% 55.5%
5028044 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 46.0 3.64e-01 100.0% 54.0%
4001493 862.1.1.0 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.50 43.0 2.99e-01 100.0% 67.5%
4854269 304.4.1.7 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket 0.50 34.0 3.00e-01 71.9% 62.5%