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MK504444.1__QBJ03575.1__UCC3521_0037__00037

Bact-Vir

MK504444.1__QBJ03575.1__UCC3521_0037__00037

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-90
PDB
Domain cluster: rep: MF001358.1__ASZ76771.1__X__00105__D7-99
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.71 44.0 3.35e-01 98.8% 26.7%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.71 65.0 6.34e-01 100.0% 100.0%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.70 44.0 3.34e-01 98.8% 27.0%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.69 44.0 3.32e-01 98.8% 27.7%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.68 61.0 5.84e-01 100.0% 88.5%
1genA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.67 42.0 3.20e-01 98.8% 26.5%
3g5oC00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 61.0 6.04e-01 100.0% 94.3%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.64 47.0 3.36e-01 100.0% 28.2%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 36.0 4.19e-01 86.7% 85.5%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.62 36.0 3.72e-01 94.0% 59.5%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 32.0 3.63e-01 79.5% 67.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 39.0 4.12e-01 92.8% 76.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 4.41e-01 100.0% 78.0%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.58 36.0 3.52e-01 95.2% 57.1%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 47.0 3.48e-01 96.4% 93.1%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 42.0 2.76e-01 98.8% 18.4%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.83e-01 100.0% 20.2%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.58e-01 79.5% 92.9%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 38.0 3.25e-01 72.3% 82.0%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.55e-01 75.9% 23.7%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 40.0 3.63e-01 90.4% 58.3%
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 45.0 4.00e-01 97.6% 64.8%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.53 42.0 4.27e-01 86.7% 88.0%
1erjB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.09e-01 98.8% 96.3%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 44.0 3.98e-01 97.6% 66.7%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 47.0 2.91e-01 100.0% 18.1%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 47.0 3.95e-01 100.0% 66.0%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 4.03e-01 97.6% 72.0%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.81e-01 98.8% 24.4%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.94e-01 97.6% 24.4%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.51 42.0 2.54e-01 90.4% 90.4%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 45.0 2.89e-01 98.8% 28.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966645 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.83 66.0 7.16e-01 98.8% 100.0%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.79 59.0 6.56e-01 92.8% 100.0%
3682129 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.76 52.0 3.30e-01 100.0% 16.1%
3361063 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.74 43.0 3.00e-01 100.0% 18.5%
3651019 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.74 50.0 3.40e-01 98.8% 20.7%
3477257 5.1.4.148 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR93 0.74 42.0 2.53e-01 100.0% 8.8%
2089781 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.72 60.0 5.89e-01 100.0% 84.1%
3457581 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.72 50.0 3.18e-01 98.8% 16.4%
3945861 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.71 64.0 6.25e-01 98.8% 91.1%
3433324 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.70 49.0 3.13e-01 98.8% 16.0%
3665959 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.70 49.0 3.18e-01 100.0% 16.5%
3763184 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.69 44.0 3.27e-01 73.5% 26.5%
3545617 5.1.11.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd 0.67 42.0 2.42e-01 100.0% 7.6%
4887373 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.67 59.0 6.05e-01 95.2% 100.0%
4966983 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.66 58.0 5.89e-01 95.2% 100.0%
5080208 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.66 59.0 5.74e-01 98.8% 93.3%
4425810 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.66 39.0 4.55e-01 96.4% 83.3%
1414015 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.65 42.0 3.14e-01 100.0% 27.0%
3454721 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.65 46.0 3.08e-01 100.0% 18.5%
3376563 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.64 57.0 4.66e-01 97.6% 62.7%
3269529 5.1.4.605 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PH 0.63 45.0 2.82e-01 100.0% 15.3%
3521876 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.63 43.0 3.20e-01 81.9% 27.8%
3579705 5.1.11.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40, HELP, Beta-prop_EML 0.63 44.0 2.88e-01 72.3% 30.2%
3643255 5.1.4.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.61 40.0 2.66e-01 100.0% 16.0%
3773428 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 43.0 2.51e-01 75.9% 67.9%
4179057 4099.1.1.26 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 0.59 33.0 3.19e-01 95.2% 45.0%
4023242 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.58 45.0 3.94e-01 100.0% 56.0%
3395174 5.1.4.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.55 50.0 3.26e-01 100.0% 27.0%
3490808 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.55 41.0 2.61e-01 98.8% 16.3%
None — 0.55 43.0 2.68e-01 83.1% 41.6%
3496732 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.54 49.0 2.98e-01 97.6% 31.1%
3895142 5.1.3.216 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.54 48.0 3.69e-01 98.8% 44.2%
4357447 5.1.4.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.53 47.0 2.97e-01 94.0% 95.2%
4079675 4959.1.1.1 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 0.53 40.0 3.72e-01 81.9% 63.3%
3705669 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.53 43.0 2.69e-01 88.0% 40.9%
3263735 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 2.81e-01 98.8% 20.9%
3352286 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 44.0 3.84e-01 95.2% 87.7%
None — 0.52 48.0 3.10e-01 100.0% 25.6%
3532938 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.90e-01 98.8% 21.6%
3908602 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.51 40.0 2.75e-01 89.2% 85.4%
4017219 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 2.84e-01 100.0% 29.3%
4867287 304.48.1.12 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.51 42.0 2.81e-01 95.2% 47.5%
4888997 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 46.0 2.94e-01 100.0% 26.7%
168548 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 37.0 2.60e-01 78.3% 40.5%
3621078 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.51 44.0 2.78e-01 92.8% 79.5%
4054285 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.50 41.0 2.61e-01 94.0% 62.4%
3784090 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 45.0 2.84e-01 100.0% 19.8%
2485200 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 45.0 3.24e-01 100.0% 43.7%
D2 medium residues 98-182
PDB