←Back to structures

MK504444.1__QBJ03602.1__UCC3521_0064__00064

Bact-Vir

MK504444.1__QBJ03602.1__UCC3521_0064__00064

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: rep: NC_015253.1__YP_004301427.1__BrPhBA9_gp094__00094__D21-69
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.74 62.0 6.20e-01 98.2% 98.3%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.73 64.0 5.67e-01 100.0% 77.8%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.65 50.0 4.91e-01 100.0% 79.4%
3vkgA15 1.10.8.1220 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 55.0 4.70e-01 100.0% 75.5%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.63 47.0 4.72e-01 92.7% 80.0%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.60 49.0 4.42e-01 100.0% 89.3%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.59 49.0 4.70e-01 100.0% 86.6%
4bqhA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 48.0 2.86e-01 98.2% 11.3%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 46.0 3.93e-01 90.9% 74.7%
2aplA02 1.10.8.340 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.55 45.0 4.10e-01 100.0% 85.2%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.55 44.0 3.45e-01 100.0% 69.0%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 38.0 3.43e-01 87.3% 50.6%
4zkdA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.03e-01 100.0% 88.8%
1v8oH00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.53 43.0 3.39e-01 100.0% 91.9%
3cf6E01 1.10.8.1240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 37.0 3.93e-01 89.1% 93.3%
3lysA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.51 43.0 3.61e-01 100.0% 95.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928496 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.76 60.0 5.89e-01 98.2% 81.7%
3791227 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.73 63.0 5.67e-01 100.0% 73.1%
5034107 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 4.66e-01 85.5% 78.8%
4932302 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.68 53.0 4.68e-01 85.5% 82.5%
5015083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 51.0 4.56e-01 85.5% 81.2%
4994527 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 48.0 4.26e-01 80.0% 77.5%
3473995 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 54.0 5.17e-01 98.2% 90.8%
5075915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 49.0 4.30e-01 85.5% 77.6%
2492244 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.63 53.0 4.84e-01 100.0% 84.2%
3739208 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 46.0 4.51e-01 85.5% 80.0%
4946290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 4.03e-01 70.9% 73.8%
4176795 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.61 51.0 3.43e-01 100.0% 40.8%
3868871 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 43.0 2.94e-01 76.4% 22.0%
3525386 197.1.1.8 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › PF26570 0.59 49.0 4.44e-01 92.7% 68.0%
4927047 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.58 48.0 4.42e-01 96.4% 88.0%
3193842 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 38.0 3.02e-01 76.4% 48.8%
4938077 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.52 44.0 3.04e-01 100.0% 76.5%
3511475 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.52 40.0 3.06e-01 87.3% 67.1%