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MK504444.1__QBJ03642.1__UCC3521_0104__00104

Bact-Vir

MK504444.1__QBJ03642.1__UCC3521_0104__00104

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

85.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-100
PDB
Domain cluster: rep: NC_015253.1__YP_004301484.1__BrPhBA9_gp151__00151__D38-104
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.81 58.0 6.48e-01 96.2% 96.7%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.72e-01 93.7% 96.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.74 56.0 6.01e-01 98.7% 94.0%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 49.0 4.40e-01 72.2% 73.4%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.66 52.0 4.93e-01 100.0% 71.1%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.22e-01 100.0% 50.4%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.33e-01 98.7% 61.6%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 41.0 3.76e-01 72.2% 92.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 39.0 3.67e-01 72.2% 55.8%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 38.0 3.44e-01 72.2% 47.2%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 43.0 4.05e-01 78.5% 82.1%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 49.0 4.03e-01 100.0% 95.9%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.55 48.0 4.36e-01 97.5% 89.0%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.96e-01 100.0% 69.6%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.55 47.0 3.96e-01 96.2% 94.9%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.46e-01 77.2% 95.7%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.78e-01 94.9% 64.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.61e-01 92.4% 83.1%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 2.92e-01 96.2% 32.8%
3n7zA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 3.40e-01 79.7% 60.6%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 47.0 3.43e-01 98.7% 38.3%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.82e-01 88.6% 75.7%
5byuA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 40.0 3.40e-01 81.0% 87.5%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 46.0 4.29e-01 98.7% 90.0%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.59e-01 91.1% 77.9%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.52 36.0 2.97e-01 73.4% 87.4%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.81e-01 94.9% 95.0%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.52 44.0 3.44e-01 100.0% 89.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 36.0 3.98e-01 92.4% 98.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 41.0 2.84e-01 88.6% 51.3%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.52 43.0 3.95e-01 96.2% 93.6%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.51 36.0 3.41e-01 72.2% 79.3%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.40e-01 94.9% 97.6%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.78e-01 100.0% 22.3%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.72e-01 96.2% 22.7%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.27e-01 91.1% 58.5%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.52e-01 88.6% 98.4%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.51 36.0 2.64e-01 74.7% 28.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.50 35.0 3.07e-01 73.4% 83.2%
2hljA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 36.0 3.00e-01 74.7% 83.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.81 67.0 6.69e-01 98.7% 87.5%
4269844 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.80 60.0 6.34e-01 98.7% 88.6%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.67e-01 98.7% 92.0%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 62.0 6.17e-01 98.7% 81.2%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.64e-01 98.7% 98.6%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.76 60.0 6.04e-01 100.0% 82.5%
4335951 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 58.0 6.00e-01 98.7% 87.7%
4318710 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 56.0 6.06e-01 98.7% 95.4%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 6.28e-01 98.7% 93.2%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 57.0 6.00e-01 98.7% 91.4%
959119 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.75 49.0 5.76e-01 92.4% 100.0%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 63.0 6.31e-01 98.7% 90.0%
490 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 5.79e-01 98.7% 85.1%
4162968 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 62.0 6.30e-01 98.7% 91.1%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 53.0 5.63e-01 98.7% 87.0%
4426276 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 58.0 6.13e-01 97.5% 97.1%
4515863 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.12e-01 98.7% 60.0%
4140958 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 57.0 5.88e-01 98.7% 88.0%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.86e-01 98.7% 83.5%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 55.0 5.66e-01 98.7% 85.3%
4302032 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 52.0 5.57e-01 98.7% 92.3%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 6.00e-01 98.7% 92.0%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 60.0 5.64e-01 100.0% 74.7%
3637664 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.70 59.0 5.17e-01 100.0% 61.7%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 56.0 5.33e-01 100.0% 76.7%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.67 47.0 4.86e-01 97.5% 77.3%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 59.0 5.65e-01 100.0% 84.4%
4323235 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 58.0 5.18e-01 98.7% 79.1%
3315173 243.3.1.46 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SWIM 0.64 45.0 4.03e-01 74.7% 83.5%
4517901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.34e-01 98.7% 85.3%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.63 55.0 5.13e-01 98.7% 88.0%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 53.0 5.33e-01 92.4% 95.0%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 5.19e-01 93.7% 98.5%
3264377 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 52.0 4.53e-01 91.1% 71.7%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 5.07e-01 91.1% 92.9%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 54.0 5.43e-01 94.9% 97.5%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 55.0 4.24e-01 98.7% 46.9%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 56.0 5.24e-01 100.0% 85.3%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 48.0 4.55e-01 100.0% 70.5%
4929053 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 43.0 4.55e-01 88.6% 84.3%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.60 51.0 5.00e-01 100.0% 87.1%
3230015 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.83e-01 81.0% 21.5%
3628107 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.40e-01 72.2% 73.8%
3322788 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.59 52.0 4.86e-01 100.0% 97.0%
3405822 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.58 41.0 3.44e-01 74.7% 72.4%
3342304 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.70e-01 87.3% 53.5%
3541262 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.56 38.0 3.60e-01 70.9% 93.0%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.55 46.0 3.30e-01 91.1% 84.0%
3515143 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.54 42.0 3.65e-01 94.9% 53.6%
3618840 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.54 47.0 3.47e-01 98.7% 48.1%
3728770 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.53 43.0 3.88e-01 88.6% 81.8%
3203375 219.1.1.129 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.53 38.0 3.31e-01 91.1% 47.7%
4342567 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 42.0 3.72e-01 88.6% 82.6%
5066083 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 39.0 2.86e-01 81.0% 57.9%
3351841 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.51 40.0 3.52e-01 89.9% 74.4%
3264686 868.1.1.1 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.50 38.0 3.08e-01 86.1% 43.4%