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MK504444.1__QBJ03663.1__UCC3521_0125__00125

Bact-Vir

MK504444.1__QBJ03663.1__UCC3521_0125__00125

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71
PDB
D2 medium residues 72-152
PDB
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.79 49.0 4.87e-01 75.3% 60.0%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.77 50.0 4.79e-01 70.4% 57.4%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.77 48.0 4.82e-01 70.4% 63.0%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 47.0 4.54e-01 70.4% 56.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.75 51.0 4.78e-01 80.2% 57.6%
1gh8A00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.75 51.0 4.94e-01 75.3% 64.0%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 49.0 4.98e-01 70.4% 69.2%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 49.0 4.84e-01 71.6% 64.3%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 46.0 4.58e-01 71.6% 61.9%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 47.0 4.63e-01 70.4% 61.4%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.71 52.0 5.10e-01 76.5% 72.1%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 48.0 4.61e-01 71.6% 90.5%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 46.0 4.55e-01 71.6% 62.5%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 47.0 3.42e-01 70.4% 26.6%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.69 48.0 4.78e-01 79.0% 71.1%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 45.0 3.23e-01 71.6% 23.5%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.67 46.0 4.45e-01 75.3% 64.0%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.67 47.0 3.36e-01 76.5% 25.5%
5fxdA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.66 46.0 3.30e-01 76.5% 25.3%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.66 44.0 4.75e-01 75.3% 83.6%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 43.0 4.23e-01 71.6% 62.2%
3g88A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 43.0 3.10e-01 71.6% 23.8%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 39.0 3.13e-01 71.6% 29.7%
1jj2L00 3.40.1120.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal protein L15e › Ribosomal protein L15 0.62 47.0 3.56e-01 81.5% 43.3%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 40.0 3.71e-01 70.4% 51.0%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 43.0 4.17e-01 75.3% 64.5%
2r7rA04 3.30.70.2480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 3.31e-01 75.3% 36.3%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 3.95e-01 72.8% 97.0%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.60 45.0 4.33e-01 81.5% 95.8%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 3.83e-01 75.3% 64.7%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.60 38.0 2.98e-01 70.4% 31.9%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 52.0 4.59e-01 100.0% 93.4%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.59 40.0 3.24e-01 70.4% 64.0%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.82e-01 76.5% 67.5%
4h4kA01 3.30.70.2940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 40.0 3.91e-01 71.6% 64.0%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.58 45.0 4.26e-01 85.2% 70.0%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 36.0 3.75e-01 70.4% 68.0%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 40.0 3.67e-01 75.3% 71.1%
3dluA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.57 39.0 3.70e-01 70.4% 73.7%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.76e-01 76.5% 67.3%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.82e-01 79.0% 58.9%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.56 40.0 3.41e-01 75.3% 44.5%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.56 41.0 4.13e-01 80.2% 94.1%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 38.0 3.87e-01 70.4% 73.4%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.74e-01 74.1% 64.6%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.60e-01 75.3% 59.0%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.66e-01 75.3% 61.9%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.64e-01 80.2% 97.4%
3up9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 33.0 2.86e-01 80.2% 37.0%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 39.0 3.27e-01 80.2% 74.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.82 52.0 4.69e-01 71.6% 48.2%
3660837 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.81 53.0 5.26e-01 71.6% 63.5%
4292806 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.81 53.0 4.81e-01 79.0% 51.4%
3317802 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.81 54.0 5.08e-01 76.5% 57.9%
3436180 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.81 53.0 5.70e-01 70.4% 78.6%
3729138 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.80 53.0 4.84e-01 70.4% 52.4%
3425342 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.80 53.0 5.53e-01 74.1% 73.3%
5022986 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.80 51.0 5.21e-01 70.4% 66.3%
3672469 304.55.1.18 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › ACT 0.80 50.0 4.17e-01 70.4% 38.2%
3312923 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.80 53.0 4.98e-01 75.3% 57.9%
4085092 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.79 54.0 5.13e-01 70.4% 60.6%
4667438 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.79 52.0 4.17e-01 79.0% 35.5%
3823591 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.79 53.0 4.95e-01 71.6% 56.0%
3971355 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.79 52.0 5.19e-01 70.4% 64.7%
5056500 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.78 50.0 4.91e-01 70.4% 61.2%
3386856 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.78 51.0 5.06e-01 70.4% 63.5%
3817212 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.78 49.0 5.28e-01 75.3% 74.3%
3450309 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.78 55.0 5.18e-01 75.3% 62.1%
3965787 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.78 52.0 4.17e-01 79.0% 36.7%
4468514 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 50.0 5.04e-01 71.6% 66.3%
4180139 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.77 50.0 4.92e-01 71.6% 62.4%
4346339 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.77 50.0 5.03e-01 71.6% 66.3%
5011911 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.77 52.0 4.93e-01 79.0% 58.9%
3302370 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 51.0 5.06e-01 74.1% 65.1%
4540169 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.77 50.0 4.91e-01 71.6% 62.4%
5044954 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 50.0 5.04e-01 70.4% 66.3%
3645785 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.77 48.0 4.40e-01 70.4% 48.6%
148700 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.77 50.0 4.79e-01 70.4% 57.4%
4549948 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.77 51.0 4.47e-01 79.0% 45.8%
3655963 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 47.0 5.05e-01 70.4% 71.4%
4976260 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.77 50.0 4.97e-01 70.4% 63.5%
4996340 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.77 51.0 5.15e-01 70.4% 68.8%
4966013 304.8.1.96 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26798 0.77 51.0 5.03e-01 70.4% 64.7%
4886051 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.77 49.0 4.99e-01 71.6% 66.3%
4886188 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.77 49.0 4.99e-01 71.6% 66.3%
4599086 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.76 49.0 4.74e-01 71.6% 59.6%
140283 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.75 49.0 4.86e-01 71.6% 63.5%
3666529 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 52.0 5.14e-01 80.2% 68.2%
5063981 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 50.0 5.25e-01 70.4% 74.7%
3383879 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 50.0 5.16e-01 75.3% 73.3%
3667432 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 53.0 5.05e-01 79.0% 63.2%
3365716 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 50.0 4.96e-01 75.3% 65.9%
4192332 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.75 48.0 4.60e-01 70.4% 56.8%
3396071 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 49.0 5.12e-01 70.4% 73.3%
3590710 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.74 50.0 4.73e-01 71.6% 58.9%
4990360 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.74 49.0 4.95e-01 70.4% 68.8%
5043215 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.74 50.0 4.27e-01 70.4% 44.6%
4316814 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 49.0 4.69e-01 71.6% 59.6%
4950495 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.73 48.0 4.89e-01 70.4% 68.8%
176905 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.71 50.0 4.47e-01 74.1% 80.0%
4943820 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 47.0 4.74e-01 71.6% 68.8%
4048096 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.69 50.0 4.83e-01 80.2% 68.9%
None 0.67 46.0 3.30e-01 71.6% 24.8%
3838844 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.66 47.0 4.48e-01 80.2% 63.8%
2607848 304.134.1.1 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N 0.66 44.0 4.49e-01 71.6% 69.1%
4963370 304.134.1.1 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N 0.65 43.0 4.39e-01 71.6% 68.8%
4947208 304.134.1.2 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › ArgZ-like_C_1st 0.65 43.0 4.47e-01 71.6% 73.3%
None 0.64 43.0 3.13e-01 71.6% 24.3%
4955085 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.64 42.0 4.23e-01 80.2% 67.5%
5051350 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 43.0 4.07e-01 75.3% 57.0%
4026407 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 44.0 3.79e-01 75.3% 46.9%
5053097 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 42.0 4.03e-01 75.3% 61.1%
4467967 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.61 42.0 2.90e-01 71.6% 19.7%
138988 304.134.1.1 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › Saccharop_dh_N 0.60 45.0 4.31e-01 81.5% 94.8%
2067736 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 41.0 3.88e-01 70.4% 60.0%
4025202 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 43.0 2.92e-01 76.5% 38.2%
5045726 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.60 39.0 3.96e-01 80.2% 67.5%
4202370 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.60 39.0 3.67e-01 71.6% 54.0%
4929428 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.58 40.0 3.96e-01 80.2% 68.2%
4566039 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 37.0 3.53e-01 70.4% 61.0%