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MK504444.1__QBJ03670.1__UCC3521_0132__00132

Bact-Vir

MK504444.1__QBJ03670.1__UCC3521_0132__00132

Identity

Accession:
MK504444 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Watanabevirus› Lactobacillus_phage_3-521

TaxID: 2510943

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-63_104-192
PDB
Domain cluster: rep: OL436245.1__UGL60619.1__X__00172__D15-59_97-171
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 22.0 3.65e-01 85.3% 97.9%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 22.0 3.41e-01 85.3% 92.3%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.56 20.0 3.36e-01 73.4% 100.0%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 18.0 3.04e-01 82.5% 95.3%
3ga8A00 3.10.20.860 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 22.0 3.04e-01 90.9% 77.6%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 23.0 3.40e-01 86.7% 95.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 29.0 3.10e-01 85.3% 61.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924149 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 23.0 3.65e-01 85.3% 96.0%
3503780 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 25.0 3.73e-01 86.7% 90.8%
3886646 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 24.0 3.57e-01 86.0% 89.2%
4019925 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 24.0 3.44e-01 86.7% 84.3%
4119802 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 24.0 3.50e-01 86.0% 89.2%
3270547 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 24.0 3.43e-01 86.0% 89.2%
3927663 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 22.0 3.07e-01 86.7% 78.5%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 22.0 3.43e-01 84.6% 96.6%
3925408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 20.0 3.10e-01 85.3% 94.0%
2855767 4.1.1.4 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e 0.51 32.0 3.38e-01 100.0% 68.2%
D2 medium residues 65-103
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 2.99e-01 97.4% 28.2%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.53 42.0 2.90e-01 100.0% 80.3%
5jtwA06 6.20.50.160 Special › Other non-globular › N-terminal domain of TfIIb › 0.52 35.0 3.15e-01 92.3% 43.5%
2glzA00 3.30.1330.130 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 0.52 41.0 2.98e-01 100.0% 37.6%
2mwmA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 39.0 2.80e-01 92.3% 70.2%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.42e-01 100.0% 10.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951256 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 42.0 3.30e-01 71.8% 63.3%
3559191 1086.1.1.0 ↗ beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 0.57 48.0 4.39e-01 100.0% 70.9%
4180249 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 37.0 2.31e-01 74.4% 40.4%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 3.44e-01 92.3% 54.0%
3427825 2484.1.1.45 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.50 35.0 2.70e-01 92.3% 62.1%
3951735 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.50 35.0 2.32e-01 94.9% 14.4%