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MK510962.1__QBI77051.1__X__00012

Bact-Vir

MK510962.1__QBI77051.1__X__00012

Identity

Accession:
MK510962 ↗
Kingdom:
phage

Quality

73.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_Pae_CF3a

TaxID: 2563569

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-61
PDB
D2 medium residues 62-207
PDB
Domain cluster: rep: OQ633420.1__WEV90012.1__X__00015__D298-345_374-472
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.78 68.0 4.51e-01 91.1% 33.5%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.77 64.0 4.09e-01 87.0% 29.1%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.75 63.0 4.36e-01 86.3% 40.9%
3fhhA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 63.0 4.23e-01 87.0% 32.2%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 63.0 4.27e-01 87.0% 38.2%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.74 62.0 3.96e-01 87.7% 27.4%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.74 61.0 4.07e-01 87.7% 31.9%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 62.0 4.11e-01 89.0% 43.8%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.70 58.0 4.05e-01 87.0% 34.9%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.70 57.0 3.95e-01 84.2% 34.9%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 59.0 3.87e-01 89.0% 42.9%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.69 57.0 4.22e-01 86.3% 41.8%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.68 55.0 4.23e-01 83.6% 45.5%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.67 51.0 4.27e-01 80.1% 94.8%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 55.0 3.71e-01 88.4% 27.9%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.66 53.0 3.96e-01 84.9% 37.3%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.65 54.0 3.89e-01 85.6% 47.5%
7vu0A01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.64 51.0 3.66e-01 84.2% 41.2%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.64 59.0 4.17e-01 98.6% 96.0%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.64 53.0 4.33e-01 86.3% 51.2%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 53.0 3.93e-01 89.0% 42.5%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.62 50.0 4.18e-01 84.2% 53.3%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 48.0 3.80e-01 82.2% 57.8%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 51.0 3.94e-01 88.4% 52.3%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 49.0 4.82e-01 84.9% 93.5%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.59 45.0 3.52e-01 78.8% 45.3%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.59 49.0 4.17e-01 86.3% 71.6%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.59 46.0 3.76e-01 82.2% 63.2%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 48.0 4.51e-01 86.3% 82.2%
1tk1A00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.57 49.0 4.27e-01 92.5% 84.5%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.56 46.0 3.78e-01 84.9% 59.6%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 44.0 4.18e-01 82.9% 84.9%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.55 50.0 4.46e-01 98.6% 96.6%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.96e-01 87.0% 77.5%
5eo6B00 3.40.1500.10 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic 0.54 49.0 3.83e-01 97.9% 70.0%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 36.0 3.36e-01 78.1% 55.9%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 48.0 4.82e-01 97.9% 95.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.52 35.0 3.67e-01 87.7% 73.5%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.51 41.0 3.31e-01 85.6% 71.4%
1uunA01 2.60.40.1650 Mainly Beta › Sandwich › Immunoglobulin-like › Porin MspA (Ig-like beta-sandwich domain) 0.50 33.0 3.43e-01 99.3% 71.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4865042 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.78 65.0 4.33e-01 86.3% 41.1%
3947597 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.77 65.0 4.96e-01 87.0% 47.7%
4538768 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.77 66.0 4.26e-01 89.0% 40.2%
4336262 5084.5.1.11 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.74 61.0 4.41e-01 85.6% 44.3%
2719886 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.72 61.0 3.75e-01 89.0% 26.8%
3235810 5087.3.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.72 57.0 4.64e-01 82.9% 64.8%
4156350 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.71 58.0 4.21e-01 84.9% 40.3%
None — 0.70 56.0 4.70e-01 83.6% 81.1%
4679157 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.69 56.0 4.07e-01 84.9% 43.9%
2156904 5084.5.3.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.69 59.0 4.34e-01 89.7% 72.9%
3332730 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.68 56.0 4.05e-01 85.6% 53.1%
3964588 5084.5.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.68 54.0 4.16e-01 83.6% 48.4%
3511259 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.67 55.0 4.33e-01 87.0% 58.0%
4195943 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.67 56.0 4.24e-01 87.7% 58.2%
5065294 4051.1.1.0 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.65 52.0 4.88e-01 82.2% 77.6%
382272 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.65 54.0 4.15e-01 87.7% 56.5%
4377115 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.64 53.0 3.15e-01 87.0% 15.7%
3942123 5084.5.2.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.64 57.0 3.99e-01 94.5% 35.7%
3839997 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.63 57.0 4.08e-01 97.9% 88.0%
5081121 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.63 52.0 4.87e-01 86.3% 82.9%
4669999 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 52.0 4.06e-01 87.7% 54.6%
3465157 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.62 51.0 3.73e-01 86.3% 42.2%
3964265 5084.1.1.43 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter 0.61 47.0 4.73e-01 79.5% 91.0%
4184524 5084.5.1.18 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.61 51.0 3.78e-01 87.0% 39.1%
3963443 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.61 43.0 4.62e-01 78.8% 83.2%
3386238 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 50.0 3.83e-01 87.7% 45.3%
200993 5084.9.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.59 45.0 3.52e-01 78.8% 45.3%
4010697 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.59 49.0 3.69e-01 87.7% 51.6%
3978611 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.58 46.0 3.53e-01 82.9% 90.9%
3976326 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.58 46.0 4.26e-01 82.9% 70.0%
145377 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.58 45.0 4.52e-01 82.2% 87.5%
3965061 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.58 47.0 3.88e-01 86.3% 61.5%
3975988 5084.3.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.57 44.0 3.63e-01 87.7% 45.0%
5080405 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 48.0 4.63e-01 88.4% 83.5%
4670451 5084.5.4.9 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 0.57 51.0 3.93e-01 98.6% 84.8%
139764 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.57 45.0 3.63e-01 82.9% 51.5%
4547630 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.54 49.0 3.88e-01 97.9% 88.3%
3838035 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.54 38.0 3.45e-01 73.3% 99.0%
4652602 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 47.0 3.66e-01 98.6% 91.3%
4116729 5084.1.1.6 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.52 40.0 3.86e-01 80.8% 80.6%
3506244 5084.1.1.16 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Ail_Lom 0.52 47.0 4.47e-01 97.9% 94.8%
4222629 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.52 41.0 4.04e-01 82.2% 87.1%
3839432 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.51 41.0 3.63e-01 84.9% 78.6%
3839919 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 42.0 3.64e-01 87.0% 90.0%
D3 medium residues 208-332
PDB