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MK510993.1__QBI78960.1__X__00006
Bact-VirMK510993.1__QBI78960.1__X__00006
Identity
- Accession:
- MK510993 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Taxonomy
TaxID: 2563510
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-62_115-253_317-367
Domain cluster:
rep: NC_070791.1__YP_010652895.1__PP487_gp30__00030__D3-283
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.77 | 68.0 | 7.02e-01 | 100.0% | 96.0% |
| 1rypD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.75 | 67.0 | 6.32e-01 | 100.0% | 80.1% |
| 2pk0A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 55.0 | 5.18e-01 | 93.7% | 98.4% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.62 | 53.0 | 4.53e-01 | 92.3% | 96.8% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.61 | 52.0 | 5.17e-01 | 92.8% | 100.0% |
| 4jndA02 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 52.0 | 4.70e-01 | 92.8% | 95.7% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.58 | 50.0 | 4.85e-01 | 93.7% | 99.6% |
| 1qmiA02 | 3.30.360.20 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain | 0.56 | 25.0 | 3.66e-01 | 87.4% | 93.4% |
| 3lmlA01 | 3.10.450.690 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 27.0 | 3.47e-01 | 81.6% | 81.8% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 26.0 | 3.43e-01 | 71.0% | 91.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4994095 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.89 | 87.0 | 8.14e-01 | 100.0% | 93.4% |
| 4974446 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.88 | 85.0 | 7.61e-01 | 100.0% | 96.3% |
| 4974130 | 210.1.1.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits | 0.87 | 84.0 | 7.65e-01 | 100.0% | 96.5% |
| 3405513 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.66 | 62.0 | 5.55e-01 | 100.0% | 91.4% |
| 5033199 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.64 | 60.0 | 4.76e-01 | 100.0% | 68.6% |
| 3223910 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.64 | 60.0 | 5.44e-01 | 100.0% | 91.6% |
| 3294481 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.61 | 53.0 | 4.55e-01 | 93.2% | 89.0% |
| 5072066 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.58 | 52.0 | 4.81e-01 | 97.1% | 97.4% |
| 3935636 | 210.1.4.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 | 0.56 | 46.0 | 4.01e-01 | 86.5% | 99.4% |
| 3414280 | 11.1.1.191 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM39 | 0.55 | 21.0 | 2.95e-01 | 100.0% | 68.0% |
| 1298174 | 260.1.1.1 ↗ | a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin | 0.50 | 26.0 | 3.43e-01 | 71.0% | 91.8% |
D2
medium
residues 257-316
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4byfC02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 3.18e-01 | 76.7% | 31.7% |
| 1xn8A00 | 1.10.3230.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › YqbG-like | 0.55 | 40.0 | 3.15e-01 | 78.3% | 42.7% |
| 3pp8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 39.0 | 2.90e-01 | 85.0% | 45.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4358375 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.80 | 57.0 | 3.76e-01 | 76.7% | 19.6% |
| 3187277 | 3979.1.1.1 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11_DNA_bind | 0.66 | 56.0 | 4.49e-01 | 95.0% | 60.0% |
| 3985356 | 2487.1.1.10 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_2_N | 0.66 | 45.0 | 3.05e-01 | 71.7% | 86.4% |
| 3881502 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.51 | 38.0 | 2.59e-01 | 86.7% | 50.2% |
| 3612846 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 38.0 | 2.72e-01 | 81.7% | 96.4% |