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MK510993.1__QBI78973.1__X__00019

Bact-Vir

MK510993.1__QBI78973.1__X__00019

Identity

Accession:
MK510993 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-53
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09048.18 best Cro 55.9 4.50e-15 100.0% 83.0%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.91 85.0 7.88e-01 100.0% 82.0%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.78 67.0 6.20e-01 100.0% 78.5%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 4.96e-01 70.0% 69.0%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 4.74e-01 72.0% 57.6%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 4.46e-01 76.0% 78.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 4.24e-01 70.0% 46.3%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.74 49.0 3.24e-01 70.0% 18.0%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 4.32e-01 74.0% 81.7%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.76e-01 70.0% 72.7%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 4.71e-01 86.0% 88.8%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 4.74e-01 70.0% 74.1%
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 64.0 5.81e-01 98.0% 87.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.28e-01 78.0% 79.5%
2hinA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 63.0 5.70e-01 100.0% 83.3%
2ppxA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 56.0 5.30e-01 90.0% 91.8%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.67 53.0 3.95e-01 84.0% 48.7%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 4.19e-01 70.0% 59.7%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 56.0 4.04e-01 90.0% 41.3%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 3.81e-01 70.0% 73.1%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 44.0 4.00e-01 70.0% 56.1%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.66 55.0 4.78e-01 90.0% 72.2%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 3.71e-01 70.0% 45.9%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 3.77e-01 72.0% 72.6%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 3.51e-01 70.0% 39.8%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 3.84e-01 70.0% 56.9%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 43.0 3.35e-01 70.0% 35.2%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 3.74e-01 70.0% 50.7%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 43.0 3.86e-01 70.0% 53.6%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.94e-01 84.0% 90.0%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.24e-01 72.0% 76.9%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.76e-01 72.0% 69.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.50e-01 74.0% 78.6%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.68e-01 70.0% 68.8%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.28e-01 86.0% 63.7%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 36.0 2.85e-01 74.0% 27.9%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.26e-01 84.0% 72.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.44e-01 80.0% 70.2%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.88e-01 90.0% 84.1%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.24e-01 88.0% 71.7%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.26e-01 90.0% 37.5%
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 35.0 3.02e-01 74.0% 36.8%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.18e-01 90.0% 74.5%
1u0tB01 3.40.50.10330 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 0.54 40.0 3.03e-01 84.0% 58.3%
4r2yC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.52e-01 82.0% 60.0%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 35.0 3.25e-01 82.0% 50.7%
6h4dA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.68e-01 78.0% 94.7%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 38.0 2.42e-01 88.0% 18.6%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.20e-01 90.0% 41.8%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.02e-01 74.0% 74.4%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.51 39.0 3.32e-01 98.0% 97.2%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.51 40.0 3.49e-01 88.0% 70.5%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 37.0 2.42e-01 90.0% 80.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
46219 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.85 76.0 6.92e-01 100.0% 75.8%
2389361 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.80 70.0 6.54e-01 100.0% 82.3%
3981080 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.79 55.0 4.51e-01 72.0% 78.8%
4970801 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.78 60.0 4.95e-01 82.0% 60.0%
159227 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.78 67.0 6.20e-01 100.0% 78.5%
3225517 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.78 52.0 4.66e-01 70.0% 52.9%
3589192 101.1.1.68 alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.77 52.0 4.43e-01 70.0% 77.5%
3966780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 54.0 4.40e-01 76.0% 78.9%
3699952 101.1.2.120 alpha arrays › HTH › HTH › winged helix domain › DDRGK 0.72 49.0 3.52e-01 70.0% 53.1%
5060805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 47.0 3.76e-01 70.0% 38.0%
4975589 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 47.0 4.10e-01 70.0% 52.0%
3266230 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.70 52.0 4.92e-01 100.0% 66.7%
3952885 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.69 53.0 5.33e-01 82.0% 100.0%
3954355 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 53.0 4.00e-01 82.0% 45.5%
4929856 101.1.9.18 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.68 53.0 4.29e-01 84.0% 55.6%
3284505 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.68 53.0 3.98e-01 84.0% 44.3%
5037780 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 59.0 5.10e-01 100.0% 83.7%
4173167 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.67 55.0 5.07e-01 92.0% 76.9%
4668445 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 56.0 5.47e-01 90.0% 94.5%
3943313 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.66 55.0 4.12e-01 90.0% 45.2%
4061721 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.65 55.0 3.96e-01 90.0% 40.0%
4668740 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 51.0 3.93e-01 84.0% 48.6%
4999554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 3.52e-01 70.0% 45.6%
1844183 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.63 51.0 3.73e-01 90.0% 39.4%
5079941 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 3.63e-01 70.0% 54.7%
5042832 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.60 42.0 3.52e-01 74.0% 68.9%
5026583 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 40.0 3.56e-01 70.0% 52.0%
4127516 101.1.2.28 alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.60 48.0 4.23e-01 90.0% 96.0%
3784144 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.60 46.0 3.58e-01 94.0% 73.1%
4367442 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.32e-01 84.0% 87.1%
4168969 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 48.0 2.92e-01 90.0% 23.1%
4525632 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.58 38.0 3.12e-01 70.0% 71.2%
4929135 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 41.0 3.48e-01 78.0% 72.2%
5042411 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 41.0 3.54e-01 78.0% 80.0%
5011663 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.55 45.0 2.83e-01 100.0% 84.2%
5010374 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 3.41e-01 86.0% 60.0%
4030214 304.48.1.6 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A 0.54 41.0 3.08e-01 92.0% 49.0%
5078709 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 39.0 3.23e-01 90.0% 88.2%
5025624 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 41.0 3.54e-01 88.0% 55.0%
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 44.0 3.46e-01 98.0% 70.9%
3953026 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.68e-01 86.0% 70.8%
3972187 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.51 36.0 3.16e-01 80.0% 83.5%
4985757 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.51 39.0 3.34e-01 96.0% 89.0%
5041922 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.51 38.0 3.38e-01 88.0% 55.0%