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MK510993.1__QBI79003.1__X__00049
Bact-VirMK510993.1__QBI79003.1__X__00049
Identity
- Accession:
- MK510993 ↗
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Taxonomy
TaxID: 2563510
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-100
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 57.0 | 6.14e-01 | 75.6% | 82.4% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 56.0 | 5.98e-01 | 75.6% | 80.5% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 54.0 | 6.11e-01 | 74.4% | 93.8% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 55.0 | 4.70e-01 | 75.6% | 63.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.74 | 63.0 | 5.74e-01 | 91.9% | 77.0% |
| 1hx8A02 | 1.20.58.150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain | 0.72 | 52.0 | 4.63e-01 | 74.4% | 60.7% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 53.0 | 5.22e-01 | 76.7% | 73.6% |
| 3r2qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.69 | 51.0 | 4.62e-01 | 76.7% | 78.8% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.68 | 49.0 | 3.91e-01 | 75.6% | 63.4% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.66 | 49.0 | 4.29e-01 | 79.1% | 83.3% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 46.0 | 4.52e-01 | 72.1% | 91.2% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 44.0 | 3.12e-01 | 70.9% | 23.3% |
| 1exaA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.64 | 48.0 | 3.47e-01 | 79.1% | 83.5% |
| 1navA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.64 | 47.0 | 3.24e-01 | 75.6% | 71.9% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.64 | 47.0 | 4.17e-01 | 80.2% | 58.8% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.63 | 45.0 | 3.63e-01 | 76.7% | 98.4% |
| 7wz5A01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.63 | 45.0 | 3.73e-01 | 74.4% | 79.5% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 53.0 | 5.10e-01 | 91.9% | 85.6% |
| 3nb0B03 | 6.10.260.10 | Special › Helix non-globular › F1FO ATP Synthase › | 0.61 | 42.0 | 4.28e-01 | 70.9% | 89.3% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 4.11e-01 | 73.3% | 82.7% |
| 4iw9A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 46.0 | 4.16e-01 | 79.1% | 81.4% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.60 | 47.0 | 4.03e-01 | 82.6% | 58.6% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 42.0 | 4.12e-01 | 74.4% | 70.5% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.59 | 40.0 | 4.12e-01 | 73.3% | 74.7% |
| 4l6rA02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 45.0 | 3.13e-01 | 83.7% | 46.2% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.57 | 43.0 | 3.81e-01 | 80.2% | 79.4% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.57 | 42.0 | 3.85e-01 | 77.9% | 66.7% |
| 4xaiB02 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.57 | 42.0 | 3.34e-01 | 80.2% | 65.3% |
| 3cf6E03 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.57 | 45.0 | 3.90e-01 | 83.7% | 82.4% |
| 1vljA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 45.0 | 3.44e-01 | 87.2% | 83.9% |
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 44.0 | 3.09e-01 | 88.4% | 44.4% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 43.0 | 3.73e-01 | 83.7% | 74.3% |
| 3rpmA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.56 | 40.0 | 4.02e-01 | 88.4% | 75.3% |
| 1qlbA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.55 | 40.0 | 3.65e-01 | 76.7% | 61.0% |
| 1n1fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 42.0 | 3.54e-01 | 83.7% | 75.2% |
| 1wdhA02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.50 | 35.0 | 3.38e-01 | 73.3% | 76.5% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4445940 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.83 | 58.0 | 6.27e-01 | 75.6% | 84.9% |
| 5064973 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.81 | 57.0 | 6.28e-01 | 75.6% | 88.6% |
| 2141223 | 5055.1.1.1 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CaMBD | 0.81 | 50.0 | 4.85e-01 | 70.9% | 56.8% |
| 5029513 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.80 | 57.0 | 6.23e-01 | 76.7% | 90.0% |
| 5029994 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.79 | 55.0 | 6.32e-01 | 75.6% | 95.4% |
| 3613593 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 56.0 | 4.25e-01 | 75.6% | 43.6% |
| 3668980 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.76 | 51.0 | 4.32e-01 | 74.4% | 43.7% |
| 3563979 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.76 | 55.0 | 4.54e-01 | 75.6% | 86.9% |
| 3562283 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.75 | 55.0 | 4.57e-01 | 75.6% | 92.9% |
| 4055485 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.75 | 55.0 | 6.05e-01 | 76.7% | 92.9% |
| 3410408 | 3712.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 | 0.75 | 46.0 | 4.74e-01 | 72.1% | 64.3% |
| 3615191 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.74 | 54.0 | 4.14e-01 | 75.6% | 42.8% |
| 3494783 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.74 | 54.0 | 4.48e-01 | 75.6% | 90.0% |
| 3675413 | 174.1.1.63 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PGG | 0.74 | 54.0 | 4.44e-01 | 75.6% | 56.6% |
| 3705834 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.74 | 54.0 | 4.32e-01 | 75.6% | 49.0% |
| 3909548 | 174.1.1.43 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 | 0.73 | 53.0 | 4.21e-01 | 75.6% | 77.6% |
| 2673302 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.72 | 51.0 | 4.70e-01 | 72.1% | 67.0% |
| 4607020 | 192.2.1.3 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Rad50_zn_hook | 0.72 | 52.0 | 4.39e-01 | 74.4% | 91.9% |
| 3516367 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.72 | 52.0 | 4.43e-01 | 75.6% | 89.6% |
| 3922588 | 3559.1.1.40 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Bap31 | 0.72 | 53.0 | 4.21e-01 | 76.7% | 68.5% |
| 3926392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.71 | 52.0 | 4.40e-01 | 75.6% | 94.1% |
| 3417174 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.71 | 51.0 | 4.30e-01 | 75.6% | 87.5% |
| 3689697 | 605.4.1.8 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › MARVEL | 0.71 | 49.0 | 4.85e-01 | 70.9% | 68.9% |
| 3726416 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.70 | 50.0 | 3.54e-01 | 75.6% | 43.5% |
| 4176207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 54.0 | 4.43e-01 | 83.7% | 50.0% |
| 3979725 | 3291.1.1.15 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2583 | 0.68 | 47.0 | 4.65e-01 | 70.9% | 67.8% |
| 3924031 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.66 | 48.0 | 3.56e-01 | 74.4% | 54.2% |
| 3279822 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.66 | 46.0 | 4.12e-01 | 72.1% | 96.7% |
| 4974229 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 48.0 | 3.74e-01 | 75.6% | 72.0% |
| 4374428 | 4177.1.1.14 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_2 | 0.66 | 45.0 | 3.21e-01 | 70.9% | 73.9% |
| 3229078 | 150.5.1.124 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Claudin_3 | 0.64 | 44.0 | 4.28e-01 | 70.9% | 80.0% |
| 3716970 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.64 | 45.0 | 3.95e-01 | 75.6% | 74.8% |
| 3207024 | 4177.1.1.9 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom | 0.64 | 47.0 | 3.28e-01 | 76.7% | 78.4% |
| 4946656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 43.0 | 3.89e-01 | 70.9% | 50.8% |
| 5055943 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 45.0 | 4.31e-01 | 74.4% | 73.0% |
| 4010416 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 3.83e-01 | 70.9% | 48.8% |
| 3781362 | 7015.1.1.10 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › TMD0_ABC | 0.62 | 47.0 | 3.73e-01 | 81.4% | 81.1% |
| 3651322 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 49.0 | 3.35e-01 | 90.7% | 64.2% |
| 3723192 | 5069.1.3.55 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DUF202 | 0.58 | 41.0 | 3.74e-01 | 75.6% | 74.2% |
| 3300432 | 603.1.1.102 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF3537 | 0.57 | 43.0 | 2.93e-01 | 82.6% | 62.5% |
| 3262781 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 40.0 | 3.40e-01 | 75.6% | 80.0% |
| 4263797 | 109.4.1.506 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nop14 | 0.53 | 45.0 | 3.07e-01 | 100.0% | 63.7% |
| 3739839 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.51 | 41.0 | 3.79e-01 | 87.2% | 82.7% |