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MK511011.1__QBI80727.1__X__00086

Bact-Vir

MK511011.1__QBI80727.1__X__00086

Identity

Accession:
MK511011 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-62
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05269.18 best Phage_CII 38.4 1.60e-09 100.0% 56.0%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.88 78.0 7.02e-01 96.5% 72.4%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.73 59.0 4.08e-01 100.0% 26.5%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 51.0 4.28e-01 86.0% 45.7%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 4.86e-01 80.7% 65.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 42.0 4.12e-01 93.0% 55.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 53.0 4.32e-01 84.2% 44.9%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 51.0 3.89e-01 91.2% 36.2%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 48.0 4.72e-01 77.2% 100.0%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 44.0 4.90e-01 87.7% 90.9%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.65 50.0 3.17e-01 86.0% 16.6%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 45.0 3.82e-01 73.7% 54.3%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 4.42e-01 70.2% 70.9%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 51.0 4.64e-01 89.5% 92.4%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 46.0 3.78e-01 77.2% 52.4%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 49.0 4.47e-01 91.2% 61.0%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 51.0 4.70e-01 94.7% 68.4%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.63 56.0 3.99e-01 100.0% 33.3%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.63 42.0 3.73e-01 77.2% 47.6%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 42.0 4.33e-01 70.2% 72.2%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 51.0 4.67e-01 94.7% 92.6%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 48.0 4.58e-01 82.5% 100.0%
5i1uA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.62 45.0 2.91e-01 86.0% 15.3%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.47e-01 86.0% 76.0%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 48.0 3.23e-01 84.2% 26.7%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 51.0 4.84e-01 93.0% 100.0%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 50.0 4.36e-01 91.2% 82.0%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.61 52.0 3.82e-01 98.2% 36.3%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.48e-01 82.5% 84.4%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 48.0 4.45e-01 91.2% 67.1%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 50.0 4.35e-01 100.0% 61.2%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.19e-01 86.0% 72.5%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.59 44.0 4.27e-01 91.2% 73.4%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 45.0 4.12e-01 86.0% 62.3%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 49.0 4.49e-01 93.0% 86.8%
5zr6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 39.0 3.89e-01 70.2% 86.4%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 49.0 4.63e-01 93.0% 83.6%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 38.0 3.69e-01 75.4% 59.1%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.57 40.0 3.89e-01 73.7% 78.5%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.13e-01 80.7% 89.6%
5nx5B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 46.0 3.04e-01 98.2% 22.3%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 36.0 3.66e-01 89.5% 63.8%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.56 47.0 3.95e-01 94.7% 98.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.26e-01 84.2% 86.7%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 38.0 3.44e-01 75.4% 50.6%
2nsaA00 1.10.3120.10 Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain 0.55 44.0 3.30e-01 100.0% 32.3%
2lquA01 1.20.1420.40 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein 0.54 45.0 3.41e-01 98.2% 39.6%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 43.0 2.96e-01 91.2% 74.4%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.23e-01 93.0% 97.1%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.54 39.0 3.27e-01 80.7% 44.5%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.53 45.0 3.85e-01 98.2% 58.2%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.13e-01 86.0% 63.0%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.13e-01 87.7% 98.4%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 47.0 3.62e-01 100.0% 70.6%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 45.0 3.48e-01 96.5% 73.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2786 101.1.4.6 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.95 86.0 7.62e-01 96.5% 70.5%
3976541 101.1.4.6 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CII 0.92 81.0 7.47e-01 94.7% 75.7%
3509592 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.74 54.0 5.38e-01 80.7% 75.0%
3736326 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 52.0 4.98e-01 78.9% 64.6%
3409145 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.71 52.0 5.55e-01 80.7% 88.0%
5063535 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.70 63.0 5.59e-01 100.0% 77.5%
3590854 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.70 56.0 4.72e-01 89.5% 52.6%
4986503 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.70 59.0 4.18e-01 100.0% 51.6%
3735470 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 50.0 4.87e-01 78.9% 80.0%
4114693 5041.1.1.28 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26135 0.68 52.0 4.88e-01 98.2% 67.1%
4331721 101.1.1.225 alpha arrays › HTH › HTH › Three-helical HTH › DUF6262 0.68 50.0 4.63e-01 77.2% 77.1%
3248146 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 42.0 4.21e-01 71.9% 61.7%
5008481 131.1.1.14 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Cas3_HD 0.67 55.0 3.81e-01 96.5% 26.5%
3701892 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.67 50.0 3.72e-01 100.0% 29.7%
4034513 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 47.0 4.69e-01 75.4% 95.0%
4024167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 45.0 4.31e-01 70.2% 63.1%
3218722 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.66 48.0 4.62e-01 78.9% 69.2%
3618452 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.65 46.0 4.74e-01 78.9% 78.2%
4984666 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 45.0 4.07e-01 71.9% 86.7%
5027990 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.64 48.0 4.40e-01 98.2% 60.3%
5034349 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.64 56.0 4.63e-01 100.0% 55.8%
3588628 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.64 47.0 4.75e-01 78.9% 84.5%
3922864 101.1.1.96 alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.64 45.0 4.44e-01 73.7% 70.0%
4948785 7524.1.1.3 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › LuxC 0.64 54.0 3.59e-01 100.0% 43.9%
3546741 101.1.1.96 alpha arrays › HTH › HTH › Three-helical HTH › Neugrin 0.63 44.0 3.68e-01 73.7% 42.0%
3598408 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 3.96e-01 70.2% 54.7%
3271918 101.1.1.201 alpha arrays › HTH › HTH › Three-helical HTH › Bot1p 0.63 43.0 4.04e-01 71.9% 67.1%
3698701 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 4.15e-01 70.2% 63.1%
3397171 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.62 51.0 4.90e-01 91.2% 83.1%
5074052 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.61 41.0 4.34e-01 70.2% 78.0%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 46.0 4.57e-01 80.7% 90.0%
4977346 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 41.0 4.32e-01 70.2% 78.0%
3896790 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.14e-01 80.7% 66.7%
None 0.57 41.0 3.24e-01 100.0% 31.3%
4979523 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.57 46.0 4.02e-01 91.2% 70.0%
3795605 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 45.0 3.18e-01 91.2% 27.8%
3952144 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.56 46.0 4.46e-01 89.5% 87.7%
3588944 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.56e-01 70.2% 78.6%
3299379 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.56 47.0 3.41e-01 91.2% 38.0%
3668668 101.1.1.29 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.55 46.0 3.55e-01 91.2% 44.0%
3596143 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.55 47.0 4.46e-01 98.2% 78.6%
3662896 101.1.1.411 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r2 0.54 46.0 3.56e-01 93.0% 44.8%
3957509 101.1.2.140 alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.54 46.0 4.53e-01 91.2% 93.3%
5082754 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.53 44.0 4.38e-01 89.5% 90.0%
4031537 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.53 40.0 3.41e-01 84.2% 50.0%
5010215 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 42.0 4.18e-01 89.5% 85.0%
D2 medium residues 76-159
PDB