←Back to structures

MK511012.1__QBI80733.1__X__00005

Bact-Vir

MK511012.1__QBI80733.1__X__00005

Identity

Accession:
MK511012 ↗
Kingdom:
phage

Quality

60.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_vB_Pae_BR153a

TaxID: 2563500

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 100-147
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c0rA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.74 53.0 3.90e-01 79.2% 30.3%
6a80A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.71 52.0 3.85e-01 81.2% 31.4%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 48.0 3.56e-01 72.9% 32.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 3.77e-01 85.4% 72.6%
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.63 43.0 4.46e-01 70.8% 95.3%
2i6tA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.62 48.0 3.47e-01 89.6% 84.9%
4hcwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 47.0 3.30e-01 91.7% 56.2%
2x49A04 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.60 43.0 3.45e-01 77.1% 45.5%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.48e-01 83.3% 96.3%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.59 52.0 3.49e-01 100.0% 71.4%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.59 43.0 3.29e-01 79.2% 67.2%
2o8bB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 45.0 3.34e-01 85.4% 51.1%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.58 41.0 2.80e-01 77.1% 38.5%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 45.0 3.24e-01 85.4% 46.3%
1q35A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 40.0 2.71e-01 75.0% 26.3%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 41.0 2.73e-01 81.2% 68.3%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.53 44.0 3.22e-01 91.7% 43.0%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 42.0 2.81e-01 85.4% 63.6%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.76e-01 91.7% 98.7%
1neeA01 3.30.70.3150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.16e-01 81.2% 73.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4190224 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.74 65.0 3.70e-01 95.8% 28.7%
3943323 7523.1.1.4 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.71 52.0 3.82e-01 79.2% 31.7%
4943696 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.63 53.0 3.28e-01 100.0% 43.9%
4159140 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.60 48.0 2.78e-01 87.5% 41.5%
3276262 304.36.1.2 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.59 42.0 3.29e-01 77.1% 51.4%
4556494 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.57 40.0 3.21e-01 75.0% 90.3%
3002691 2007.5.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.55 43.0 2.79e-01 85.4% 62.6%
D2 high residues 378-443
PDB
Domain cluster: rep: MW406974.1__QQO38611.1__X__00086__D283-359
D3 high residues 461-515
PDB
Domain cluster: rep: NC_070826.1__YP_010660212.1__PP590_gp55__00055__D6-54
D4 medium residues 3-97
PDB
D5 medium residues 188-237
PDB
D6 medium residues 238-293_305-316
PDB