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MK511022.1__QBI81344.1__X__00002
Bact-VirMK511022.1__QBI81344.1__X__00002
Identity
- Accession:
- MK511022 ↗
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Taxonomy
TaxID: 2563588
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 567-730_755-767
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 88.8 | 6.40e-25 | 98.3% | 21.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hstB03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.80 | 57.0 | 6.61e-01 | 85.9% | 99.2% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 26.0 | 3.32e-01 | 74.6% | 81.9% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 30.0 | 3.85e-01 | 98.9% | 99.0% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.51 | 27.0 | 3.55e-01 | 97.2% | 98.8% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.50 | 27.0 | 3.31e-01 | 80.8% | 82.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007926 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.82 | 71.0 | 4.54e-01 | 100.0% | 21.6% |
| 3970199 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.81 | 75.0 | 4.76e-01 | 100.0% | 22.5% |
| 4980065 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.80 | 74.0 | 4.76e-01 | 100.0% | 23.4% |
| 5010060 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.79 | 70.0 | 4.44e-01 | 100.0% | 21.0% |
| 3281462 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.79 | 68.0 | 4.36e-01 | 100.0% | 22.1% |
| 3969087 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.79 | 71.0 | 4.48e-01 | 100.0% | 20.9% |
| 4980003 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.77 | 71.0 | 4.83e-01 | 100.0% | 30.8% |
| 5024443 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.74 | 70.0 | 4.50e-01 | 100.0% | 24.6% |
D2
medium
residues 45-69_266-287_533-566_778-802
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 22.5 | 7.60e-05 | 26.4% | 3.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hsrB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.93 | 69.0 | 4.67e-01 | 76.4% | 89.4% |
| 6nvyB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.84 | 62.0 | 4.36e-01 | 76.4% | 90.2% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.69 | 49.0 | 3.72e-01 | 73.6% | 86.3% |
| 1s3rA03 | 3.40.30.40 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin | 0.55 | 36.0 | 3.42e-01 | 71.7% | 55.0% |
| 5hftD00 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.53 | 38.0 | 3.38e-01 | 74.5% | 55.2% |
| 1r4sA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.53 | 44.0 | 3.26e-01 | 92.5% | 100.0% |
| 4ig1A00 | 3.10.520.10 | Alpha Beta › Roll › T-fold › ApbE-like domains | 0.50 | 36.0 | 2.60e-01 | 75.5% | 28.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3198826 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.54 | 38.0 | 2.67e-01 | 73.6% | 87.2% |
| 3893819 | 321.1.1.3 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › ATP-gua_Ptrans | 0.52 | 39.0 | 2.90e-01 | 80.2% | 85.7% |
D3
medium
residues 70-189
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01804.24 best | Penicil_amidase | 133.3 | 2.20e-38 | 100.0% | 17.6% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hstA01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.93 | 89.0 | 8.07e-01 | 100.0% | 78.8% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.91 | 87.0 | 8.02e-01 | 100.0% | 86.3% |
| 1fm2A00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.86 | 82.0 | 7.47e-01 | 100.0% | 88.2% |
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.84 | 79.0 | 7.05e-01 | 100.0% | 83.9% |
| 4bthA00 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.83 | 78.0 | 6.96e-01 | 100.0% | 77.4% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.61 | 27.0 | 3.21e-01 | 72.5% | 57.5% |
| 4bwcA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.61 | 51.0 | 5.24e-01 | 100.0% | 95.7% |
| 2o8pA00 | 1.20.190.20 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain | 0.60 | 35.0 | 2.91e-01 | 80.8% | 31.1% |
| 2jbyA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 35.0 | 3.46e-01 | 92.5% | 58.3% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.54 | 31.0 | 3.26e-01 | 80.8% | 61.3% |
| 2a2fX01 | 1.10.357.30 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex subunit Sec15 C-terminal domain, N-terminal subdomain | 0.52 | 43.0 | 3.93e-01 | 92.5% | 89.8% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.52 | 39.0 | 3.00e-01 | 78.3% | 48.4% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.48e-01 | 78.3% | 81.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969087 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.96 | 93.0 | 5.41e-01 | 100.0% | 15.1% |
| 5007926 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.96 | 92.0 | 5.42e-01 | 100.0% | 16.1% |
| 4980099 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.96 | 92.0 | 8.48e-01 | 99.2% | 82.1% |
| 5010060 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.96 | 92.0 | 5.41e-01 | 100.0% | 16.0% |
| 5024443 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.95 | 92.0 | 5.45e-01 | 100.0% | 16.7% |
| 4980065 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.95 | 92.0 | 5.44e-01 | 100.0% | 17.3% |
| 5025509 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.95 | 91.0 | 5.34e-01 | 100.0% | 16.6% |
| 2507513 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.93 | 89.0 | 7.22e-01 | 100.0% | 61.6% |
| 3970199 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.92 | 89.0 | 5.22e-01 | 100.0% | 15.6% |
| 990463 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 89.0 | 7.19e-01 | 100.0% | 59.1% |
| 4132290 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 88.0 | 5.21e-01 | 100.0% | 15.9% |
| 4383075 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.92 | 87.0 | 5.15e-01 | 100.0% | 16.3% |
| 1675807 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.91 | 87.0 | 6.55e-01 | 100.0% | 48.8% |
| 4775718 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.89 | 79.0 | 6.90e-01 | 91.7% | 70.7% |
| 4770355 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.88 | 82.0 | 7.32e-01 | 100.0% | 73.3% |
| 423731 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.87 | 82.0 | 4.94e-01 | 100.0% | 19.5% |
| 3281462 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.86 | 81.0 | 4.85e-01 | 100.0% | 24.8% |
| 2823068 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.85 | 80.0 | 6.98e-01 | 100.0% | 71.9% |
| 4867315 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.84 | 79.0 | 6.95e-01 | 100.0% | 79.9% |
| 2043418 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.84 | 78.0 | 6.92e-01 | 100.0% | 80.4% |
| 4789689 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.84 | 79.0 | 6.92e-01 | 100.0% | 75.6% |
| 4520363 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.53 | 34.0 | 3.89e-01 | 79.2% | 86.7% |
| None | — | 0.53 | 42.0 | 3.31e-01 | 85.8% | 56.6% | |
| 4974791 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.51 | 38.0 | 2.96e-01 | 78.3% | 60.4% |
| 4954427 | 1075.5.1.8 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Polysacc_synt_3 | 0.50 | 37.0 | 2.96e-01 | 79.2% | 57.7% |
| 3870373 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.50 | 30.0 | 3.21e-01 | 97.5% | 66.7% |
D4
medium
residues 190-265_333-345_369-397
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.51 | 30.0 | 3.19e-01 | 95.8% | 65.0% |