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MK511040.1__QBI82450.1__X__00044

Bact-Vir

MK511040.1__QBI82450.1__X__00044

Identity

Accession:
MK511040 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_vB_Pae_CF63a

TaxID: 2563582

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-85
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.65 56.0 4.68e-01 100.0% 66.9%
4wpcA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.64 56.0 3.84e-01 100.0% 72.8%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.63 51.0 4.27e-01 97.4% 51.1%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.61 52.0 4.74e-01 100.0% 91.9%
3hr0A02 1.20.58.1970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.04e-01 76.6% 31.8%
2hfiA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.57 50.0 4.32e-01 100.0% 89.4%
1eo0A00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.55 38.0 3.84e-01 94.8% 72.7%
4i1eA03 1.25.10.30 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain 0.55 37.0 3.10e-01 70.1% 39.6%
1wxpA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 34.0 3.32e-01 94.8% 56.0%
3urgA01 6.10.140.400 Special › Helix non-globular › Helix Hairpins › 0.51 30.0 3.28e-01 80.5% 71.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3367299 192.29.1.169 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › KIP1 0.71 50.0 4.64e-01 72.7% 70.5%
5054201 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.70 63.0 5.57e-01 98.7% 83.6%
3579981 632.11.1.14 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › TMEM107 0.66 58.0 5.35e-01 97.4% 94.0%
3609099 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.64 56.0 5.39e-01 100.0% 98.9%
3982634 192.29.1.155 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1722 0.63 47.0 4.67e-01 100.0% 76.2%
5029782 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 55.0 5.26e-01 100.0% 97.8%
4205265 6171.1.1.1 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.62 42.0 3.62e-01 70.1% 48.0%
3941457 1203.1.2.3 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › YiaAB 0.62 48.0 4.13e-01 83.1% 69.2%
4142256 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.62 54.0 4.35e-01 100.0% 76.8%
3407718 601.1.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin 0.62 54.0 4.62e-01 98.7% 69.6%
3231243 4177.1.1.10 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH 0.61 51.0 3.60e-01 100.0% 76.9%
4033697 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.61 53.0 4.84e-01 100.0% 87.6%
3440579 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 40.0 4.00e-01 98.7% 67.5%
4975039 1174.1.1.1 ↗ alpha complex topology › Potassium channel TMEM175 › Potassium channel TMEM175 › Potassium channel TMEM175 › TMEM175 0.57 46.0 3.48e-01 90.9% 68.3%
5017961 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.57 35.0 3.05e-01 94.8% 39.5%
3254979 5000.4.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.56 47.0 3.30e-01 97.4% 38.2%
3496842 109.4.1.504 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ndc1_Nup 0.55 39.0 2.95e-01 75.3% 48.0%
5023678 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.55 46.0 3.61e-01 98.7% 53.7%
3230889 5082.1.1.0 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like 0.54 47.0 3.59e-01 100.0% 83.1%
3872946 601.19.1.55 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28139 0.54 46.0 2.88e-01 93.5% 34.2%
5032080 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 42.0 3.81e-01 100.0% 65.2%
3782183 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 43.0 2.63e-01 94.8% 22.6%
3417544 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.50 36.0 2.57e-01 76.6% 50.4%