←Back to structures

MK511046.1__QBI82795.1__X__00007

Bact-Vir

MK511046.1__QBI82795.1__X__00007

Identity

Accession:
MK511046 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hollowayvirus› Pseudomonas_phage_vB_Pae_BR313a

TaxID: 2563522

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 523-665_680-696
PDB
Domain cluster: rep: MH809533.1__AYJ74340.1__phiE058_004__00004__D579-730
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18798.7 best LPD3 53.0 5.10e-14 67.5% 92.9%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 25.0 3.84e-01 83.7% 85.7%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.62 24.0 3.81e-01 83.1% 93.2%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 38.0 4.40e-01 90.6% 88.1%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 32.0 4.23e-01 83.1% 93.1%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.60 33.0 4.31e-01 84.4% 96.6%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.59 22.0 3.31e-01 83.1% 83.3%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 33.0 4.08e-01 85.6% 91.6%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.57 40.0 4.43e-01 71.9% 93.0%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 28.0 3.57e-01 78.1% 80.2%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 35.0 3.81e-01 78.1% 73.5%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 33.0 3.82e-01 85.6% 78.9%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.56 42.0 4.57e-01 91.3% 96.1%
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.55 25.0 3.10e-01 76.2% 66.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 34.0 3.84e-01 77.5% 82.5%
1c7hA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 34.0 3.82e-01 80.6% 83.7%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 32.0 3.33e-01 76.9% 64.1%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 3.90e-01 79.4% 88.4%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 29.0 3.15e-01 72.5% 62.3%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 3.66e-01 75.6% 79.8%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 30.0 3.15e-01 71.2% 60.1%
4o2hA00 3.10.450.610 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 29.0 3.14e-01 75.0% 64.2%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.75e-01 89.4% 82.1%
1buqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.67e-01 80.0% 83.2%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 32.0 3.55e-01 80.0% 78.1%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 33.0 3.74e-01 90.6% 88.9%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 34.0 3.58e-01 80.0% 75.7%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 33.0 3.65e-01 80.0% 81.5%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.72e-01 73.8% 92.2%
5o46A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 32.0 3.73e-01 85.0% 90.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965867 295.1.1.16 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › LPD3 0.81 75.0 7.14e-01 98.1% 99.5%
3920557 4210.1.1.3 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.62 33.0 4.25e-01 75.6% 88.4%
1807441 243.1.1.37 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.61 38.0 4.40e-01 90.6% 88.1%
3228525 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 31.0 3.70e-01 93.8% 70.9%
152844 243.3.1.8 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.60 33.0 4.31e-01 84.4% 96.6%
1413889 274.1.1.5 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.58 25.0 3.18e-01 75.6% 65.9%
4948119 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.56 34.0 3.81e-01 73.8% 78.3%
1282329 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.56 33.0 3.68e-01 85.6% 74.4%
2617498 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 34.0 3.98e-01 78.8% 89.0%
3584211 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 40.0 4.23e-01 91.3% 84.1%
5034702 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 39.0 4.02e-01 77.5% 79.2%
3801133 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 34.0 3.78e-01 80.0% 80.5%
2724186 243.1.1.67 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.53 33.0 3.76e-01 91.3% 83.3%
4193401 243.1.1.34 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.52 32.0 3.76e-01 77.5% 87.3%
3959925 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 31.0 3.81e-01 74.4% 94.0%
1887056 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 34.0 3.79e-01 77.5% 85.8%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.52 24.0 2.56e-01 78.1% 44.8%
3251351 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 35.0 3.95e-01 78.1% 91.7%
2883156 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.51 34.0 3.76e-01 95.6% 86.2%
6372 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 35.0 3.76e-01 89.4% 82.7%
3273514 243.1.1.36 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.51 34.0 3.70e-01 91.3% 81.5%
3271321 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 34.0 3.66e-01 91.3% 79.3%
4941591 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 37.0 3.85e-01 77.5% 82.1%
4074364 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 32.0 3.52e-01 91.3% 77.7%
3955856 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.50 33.0 3.62e-01 80.0% 80.0%
3278991 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.50 38.0 3.77e-01 77.5% 75.8%
D2 medium residues 274-385_506-518
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hc9A01 3.40.50.10590 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases 0.60 44.0 4.18e-01 76.8% 93.5%
1im8B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 38.0 3.21e-01 72.0% 90.1%
6iubA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 3.40e-01 86.4% 95.1%
2pk8A00 3.30.2320.10 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain 0.53 28.0 3.20e-01 74.4% 66.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.52 28.0 3.62e-01 74.4% 92.8%
4iscA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 3.42e-01 71.2% 94.2%
1f6bB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.85e-01 92.8% 87.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3983198 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.76 51.0 6.05e-01 94.4% 100.0%
2448312 2004.1.1.437 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA, AAA_31 0.54 43.0 3.40e-01 86.4% 95.1%
None — 0.52 39.0 3.10e-01 78.4% 48.1%
D3 medium residues 386-505
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kl9A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.57 33.0 3.78e-01 78.3% 75.0%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 39.0 4.24e-01 97.5% 84.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 33.0 3.93e-01 99.2% 87.3%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 29.0 3.86e-01 77.5% 98.3%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.54 43.0 3.47e-01 84.2% 70.0%
2azjA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 44.0 3.44e-01 92.5% 62.3%
2pz9A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 38.0 3.35e-01 92.5% 50.3%
1o20A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 44.0 3.41e-01 91.7% 73.2%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578534 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.59 28.0 3.00e-01 85.0% 48.6%
3576531 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.55 41.0 3.92e-01 88.3% 66.2%
3979768 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.53 37.0 4.04e-01 94.2% 86.0%
4928310 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.50 32.0 3.53e-01 95.0% 81.7%
D4 medium residues 757-795_909-924_1114-1166
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.67 39.0 3.77e-01 92.6% 49.2%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 49.0 5.11e-01 98.1% 83.7%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.63 36.0 4.06e-01 77.8% 73.2%
4fm3A00 1.20.1270.390 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 37.0 3.88e-01 81.5% 64.2%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.62 45.0 4.32e-01 99.1% 67.2%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.61 43.0 4.20e-01 98.1% 65.8%
3gi7A00 1.20.1270.180 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 36.0 3.67e-01 81.5% 59.2%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 40.0 3.64e-01 100.0% 50.3%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 4.18e-01 98.1% 69.3%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.60 43.0 4.09e-01 98.1% 63.3%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 38.0 3.90e-01 99.1% 65.1%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.58 42.0 4.08e-01 100.0% 67.2%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 31.0 3.33e-01 88.0% 58.9%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.56 32.0 3.46e-01 99.1% 65.2%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 36.0 3.32e-01 100.0% 50.3%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 40.0 3.91e-01 100.0% 72.3%
5gl7A01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 49.0 4.20e-01 100.0% 69.9%
2hz8A00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.52 44.0 4.38e-01 100.0% 86.1%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 45.0 4.43e-01 100.0% 88.9%
3dytA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.52 40.0 3.36e-01 83.3% 51.1%
2jbrA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 45.0 3.78e-01 99.1% 65.4%
3t6gB00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.50 44.0 4.17e-01 100.0% 79.1%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 3.68e-01 99.1% 73.7%
1txdA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.50 44.0 3.51e-01 99.1% 78.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3750261 192.8.1.421 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF4745 0.58 39.0 3.68e-01 83.3% 55.6%
3617829 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 47.0 4.53e-01 100.0% 78.4%
3584233 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 49.0 3.74e-01 100.0% 61.2%
3400276 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.54 49.0 3.85e-01 100.0% 65.9%
4559444 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 47.0 3.57e-01 98.1% 52.2%
3175487 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 47.0 3.40e-01 100.0% 91.1%
3245052 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 45.0 3.60e-01 100.0% 63.2%
5009983 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 38.0 3.19e-01 77.8% 62.2%
3606020 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.51 38.0 2.89e-01 86.1% 33.3%
D5 medium residues 796-908
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jpnB01 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.55 25.0 2.99e-01 99.1% 59.7%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 38.0 3.61e-01 70.8% 97.7%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.52 30.0 3.07e-01 100.0% 59.3%
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.51 31.0 3.25e-01 78.8% 65.4%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.50 40.0 2.88e-01 85.8% 100.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3202225 3651.1.1.0 ↗ alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain 0.55 37.0 3.19e-01 99.1% 41.6%
5002776 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 23.0 2.69e-01 94.7% 50.0%
3174963 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.53 40.0 3.14e-01 80.5% 79.2%
4318670 2005.1.1.40 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.51 43.0 3.00e-01 92.9% 63.2%
3956498 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 36.0 2.65e-01 70.8% 82.2%
4262340 375.1.1.203 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g 0.50 44.0 2.96e-01 97.3% 45.3%
4988228 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.50 38.0 3.25e-01 92.0% 47.7%
D6 medium residues 1056-1113
PDB