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MK511051.1__QBI83167.1__X__00061

Bact-Vir

MK511051.1__QBI83167.1__X__00061

Identity

Accession:
MK511051 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-100
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 55.0 4.52e-01 100.0% 41.8%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 70.0 5.37e-01 100.0% 60.7%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 71.0 5.30e-01 100.0% 49.8%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.72 68.0 5.32e-01 100.0% 57.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004713 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.96 82.0 7.22e-01 100.0% 65.2%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.94 80.0 7.22e-01 100.0% 68.5%
3965072 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.89 73.0 6.63e-01 100.0% 66.2%
3964227 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 81.0 7.24e-01 100.0% 73.1%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 63.0 6.26e-01 100.0% 71.4%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 72.0 6.72e-01 100.0% 71.7%
3945675 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 83.0 7.21e-01 100.0% 72.1%
4007467 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 83.0 6.12e-01 100.0% 45.9%
4966682 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 72.0 6.87e-01 100.0% 78.3%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 73.0 6.84e-01 100.0% 75.8%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 63.0 6.11e-01 100.0% 70.9%
4964228 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 74.0 6.53e-01 100.0% 68.1%
5010452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 68.0 6.58e-01 100.0% 77.3%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 72.0 5.76e-01 100.0% 50.6%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 72.0 5.75e-01 100.0% 50.6%
4314510 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 64.0 6.24e-01 100.0% 73.6%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 71.0 6.51e-01 100.0% 72.0%
4392937 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.83 68.0 5.75e-01 100.0% 55.5%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 71.0 6.56e-01 100.0% 72.8%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 6.27e-01 100.0% 66.7%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 71.0 5.80e-01 100.0% 52.6%
5083877 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 73.0 6.46e-01 100.0% 68.9%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 67.0 6.28e-01 100.0% 71.7%
3984925 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 74.0 6.71e-01 100.0% 73.8%
3946063 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 77.0 5.98e-01 100.0% 50.8%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 72.0 6.58e-01 100.0% 74.4%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 6.17e-01 100.0% 70.8%
4285602 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 73.0 6.55e-01 100.0% 72.3%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 5.03e-01 100.0% 43.8%
5032561 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 65.0 6.40e-01 100.0% 80.0%
3941418 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 67.0 6.24e-01 100.0% 72.5%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 70.0 6.46e-01 100.0% 74.4%
3978568 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 6.66e-01 100.0% 75.6%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 5.66e-01 100.0% 55.7%
3954716 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 74.0 6.54e-01 100.0% 77.9%
4004773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 70.0 6.40e-01 100.0% 74.4%
4964778 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 72.0 5.93e-01 100.0% 57.6%
4122043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 65.0 6.15e-01 100.0% 74.2%
5081700 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 74.0 6.10e-01 100.0% 74.5%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 74.0 6.21e-01 100.0% 66.5%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 6.26e-01 100.0% 70.7%
4556095 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 72.0 6.29e-01 100.0% 84.1%
5054951 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 70.0 6.38e-01 100.0% 73.8%
4247514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 69.0 6.15e-01 100.0% 69.6%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 72.0 5.95e-01 100.0% 80.6%
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 72.0 6.08e-01 100.0% 78.1%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.12e-01 100.0% 80.0%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.13e-01 100.0% 72.0%
4961786 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.08e-01 100.0% 74.7%
4964783 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 71.0 5.82e-01 100.0% 58.8%
4274013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.09e-01 100.0% 80.0%
3945160 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.43e-01 100.0% 76.9%
3943153 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 67.0 6.11e-01 100.0% 73.1%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.07e-01 100.0% 78.7%
4134015 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 71.0 6.00e-01 100.0% 81.9%
5039846 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 70.0 5.91e-01 100.0% 65.0%
3589872 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 6.05e-01 100.0% 74.0%
4659012 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 71.0 6.12e-01 100.0% 79.3%
184514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 5.92e-01 100.0% 81.0%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 6.18e-01 100.0% 77.9%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 6.02e-01 100.0% 76.7%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 5.99e-01 100.0% 72.7%
4034079 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 70.0 6.20e-01 100.0% 75.6%
4966032 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 68.0 6.15e-01 100.0% 76.9%
4981563 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 68.0 6.61e-01 100.0% 100.0%
3989311 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 61.0 5.58e-01 100.0% 68.5%
3589594 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 68.0 5.77e-01 100.0% 73.5%
4463631 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 67.0 6.02e-01 100.0% 73.3%
3957659 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 67.0 6.02e-01 100.0% 74.1%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.68 63.0 5.45e-01 100.0% 75.3%
D2 medium residues 101-170
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 32.7 8.90e-08 70.0% 25.0%
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.80 68.0 5.11e-01 92.9% 40.3%
2hytA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.78 54.0 3.84e-01 71.4% 36.3%
2zj2A04 1.10.3380.20 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.70 55.0 4.20e-01 85.7% 63.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 42.0 4.94e-01 75.7% 87.5%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 48.0 4.43e-01 80.0% 58.1%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.68 44.0 4.72e-01 78.6% 79.3%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 43.0 4.72e-01 82.9% 82.8%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 44.0 4.63e-01 80.0% 78.1%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.64 41.0 4.36e-01 84.3% 73.0%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.63 47.0 3.83e-01 80.0% 45.4%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 47.0 3.90e-01 80.0% 48.7%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 46.0 4.76e-01 78.6% 83.6%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.31e-01 91.4% 75.7%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 3.86e-01 80.0% 59.8%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.61 46.0 4.00e-01 80.0% 59.8%
1ungE00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 50.0 4.00e-01 94.3% 59.2%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 4.97e-01 82.9% 100.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 47.0 4.53e-01 84.3% 92.3%
7xk2R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.58 51.0 3.49e-01 100.0% 54.3%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 45.0 4.54e-01 82.9% 80.3%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.58 36.0 4.35e-01 82.9% 91.8%
1yq1A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 43.0 3.67e-01 78.6% 53.6%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 38.0 3.81e-01 80.0% 68.5%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.56 36.0 3.78e-01 81.4% 72.3%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.56 40.0 3.94e-01 78.6% 76.9%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.53 35.0 3.93e-01 72.9% 100.0%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 40.0 3.44e-01 82.9% 50.4%
1q2zA00 1.25.40.240 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ku, C-terminal domain 0.52 36.0 2.98e-01 71.4% 42.5%
3o3mB02 3.40.50.11890 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 3.61e-01 94.3% 96.8%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.11e-01 92.9% 85.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941406 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 74.0 8.02e-01 87.1% 100.0%
3947901 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 79.0 8.22e-01 94.3% 100.0%
3948653 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 73.0 7.92e-01 85.7% 100.0%
5012890 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.87 70.0 7.44e-01 88.6% 100.0%
5018486 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 65.0 6.92e-01 91.4% 100.0%
5053723 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 65.0 6.97e-01 88.6% 100.0%
5011491 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 57.0 6.40e-01 75.7% 100.0%
5029992 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 56.0 6.27e-01 88.6% 100.0%
3949335 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 58.0 6.19e-01 90.0% 100.0%
4876530 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.64 47.0 4.47e-01 78.6% 66.7%
3714244 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.63 43.0 4.67e-01 80.0% 83.3%
3226578 138.1.1.2 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.63 47.0 4.11e-01 92.9% 53.3%
3610708 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 52.0 4.46e-01 95.7% 79.1%
3474853 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.28e-01 81.4% 78.5%
4197446 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.58 51.0 4.08e-01 95.7% 74.8%
4948393 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.58 37.0 3.58e-01 82.9% 57.5%
3407630 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.57 41.0 4.42e-01 77.1% 100.0%
3500923 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.53 38.0 3.72e-01 77.1% 96.2%
3587056 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 3.46e-01 97.1% 48.1%