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MK524503.1__QBI97376.1__SEA_FANCYPANTS_38__00038

Bact-Vir

MK524503.1__QBI97376.1__SEA_FANCYPANTS_38__00038

Identity

Accession:
MK524503 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-55
PDB
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fmyA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 58.0 4.12e-01 100.0% 27.2%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 61.0 4.86e-01 100.0% 45.4%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.73 61.0 5.07e-01 95.7% 90.2%
1s5jA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.71 61.0 4.25e-01 100.0% 77.1%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 51.0 3.72e-01 100.0% 28.2%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.70 57.0 5.03e-01 93.5% 100.0%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.69 58.0 4.26e-01 95.7% 72.1%
3e8vA00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.68 55.0 4.61e-01 100.0% 51.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 52.0 4.21e-01 100.0% 42.1%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.68 59.0 5.17e-01 100.0% 87.3%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.68 50.0 3.60e-01 80.4% 74.3%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.68 55.0 4.73e-01 97.8% 90.1%
4bfiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 57.0 4.39e-01 100.0% 58.9%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.67 57.0 4.03e-01 100.0% 42.3%
2frgP00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 56.0 4.40e-01 100.0% 58.5%
2xtlA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.66 58.0 4.52e-01 100.0% 46.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 54.0 3.80e-01 100.0% 46.7%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 48.0 3.58e-01 80.4% 40.7%
3u83A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.26e-01 100.0% 60.6%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 54.0 4.01e-01 100.0% 35.5%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.65 52.0 4.65e-01 100.0% 61.6%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.65 54.0 3.98e-01 100.0% 50.4%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.64 50.0 4.45e-01 95.7% 100.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.27e-01 93.5% 80.0%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 52.0 4.02e-01 100.0% 64.4%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 53.0 4.09e-01 100.0% 87.6%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 4.10e-01 100.0% 43.6%
2vtfA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 54.0 4.34e-01 100.0% 50.5%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 52.0 3.90e-01 100.0% 37.6%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 52.0 4.05e-01 100.0% 61.7%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.62 53.0 3.86e-01 100.0% 40.5%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 51.0 3.79e-01 100.0% 44.4%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.21e-01 100.0% 67.0%
2jjuA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.11e-01 100.0% 52.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 46.0 4.07e-01 100.0% 53.2%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.61 53.0 3.49e-01 97.8% 68.1%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 49.0 3.79e-01 97.8% 40.2%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.61 47.0 3.43e-01 100.0% 28.5%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 49.0 3.72e-01 100.0% 50.7%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.60 50.0 3.93e-01 100.0% 56.8%
2huhA01 2.60.40.1600 Mainly Beta › Sandwich › Immunoglobulin-like › Smr-associated-like 0.60 48.0 3.63e-01 100.0% 35.3%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.60 49.0 3.75e-01 100.0% 37.6%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 46.0 4.22e-01 100.0% 62.5%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.74e-01 100.0% 55.5%
2g2nC00 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.59 50.0 3.86e-01 100.0% 43.8%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 3.97e-01 100.0% 46.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 48.0 3.96e-01 97.8% 57.6%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 3.80e-01 100.0% 61.3%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 3.85e-01 100.0% 44.9%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.58 46.0 3.89e-01 100.0% 56.4%
3zjaA01 2.60.40.1890 Mainly Beta › Sandwich › Immunoglobulin-like › PCu(A)C copper chaperone 0.57 45.0 3.46e-01 100.0% 37.7%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.57 47.0 3.63e-01 93.5% 84.5%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 3.45e-01 100.0% 31.5%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 3.48e-01 100.0% 37.7%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 41.0 3.62e-01 100.0% 49.4%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.56 43.0 2.99e-01 87.0% 93.5%
1y8xB00 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.56 39.0 3.19e-01 76.1% 76.1%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 44.0 3.54e-01 100.0% 41.9%
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.43e-01 80.4% 80.5%
2o0yB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 48.0 3.22e-01 100.0% 65.5%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 48.0 3.20e-01 100.0% 69.1%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 45.0 3.29e-01 100.0% 73.9%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.29e-01 100.0% 34.3%
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.23e-01 100.0% 67.2%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 45.0 2.86e-01 100.0% 80.5%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.52 38.0 2.86e-01 82.6% 59.1%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 41.0 2.75e-01 100.0% 97.5%
4uapA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 2.95e-01 100.0% 52.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 41.0 3.13e-01 100.0% 65.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965635 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.84 71.0 6.31e-01 93.5% 96.9%
4048407 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.76 66.0 5.58e-01 100.0% 95.0%
3381288 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.73 63.0 5.23e-01 100.0% 90.6%
4091138 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.73 63.0 5.11e-01 100.0% 85.6%
4502459 304.24.1.4 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.72 61.0 4.38e-01 100.0% 52.1%
3994958 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.70 58.0 4.26e-01 100.0% 46.7%
3505715 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 60.0 5.02e-01 100.0% 91.3%
4985395 304.4.1.75 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.69 55.0 4.89e-01 97.8% 100.0%
4676848 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.68 57.0 4.99e-01 100.0% 97.3%
4340473 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.68 57.0 4.76e-01 97.8% 84.7%
4455319 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.67 58.0 4.85e-01 97.8% 90.0%
4964337 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.67 58.0 5.52e-01 100.0% 90.9%
3786112 317.1.1.0 a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase 0.66 51.0 3.65e-01 100.0% 26.1%
4285070 304.24.1.4 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.66 56.0 4.75e-01 100.0% 90.0%
3957978 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.65 54.0 4.41e-01 100.0% 48.9%
3958992 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.65 55.0 4.67e-01 97.8% 90.0%
3738385 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.65 54.0 4.52e-01 97.8% 84.7%
3971972 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 54.0 4.19e-01 100.0% 41.7%
3917685 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.65 50.0 4.11e-01 100.0% 45.6%
3551231 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.64 52.0 4.12e-01 100.0% 41.9%
3281154 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.64 54.0 4.59e-01 97.8% 90.0%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.63 52.0 4.09e-01 100.0% 43.6%
420847 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.62 52.0 3.99e-01 100.0% 39.2%
3863519 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.62 53.0 4.11e-01 100.0% 59.0%
3700429 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.62 44.0 3.18e-01 76.1% 72.1%
3933905 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.62 52.0 3.77e-01 100.0% 37.1%
4440530 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 51.0 3.63e-01 100.0% 30.3%
5070388 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 53.0 3.77e-01 100.0% 32.4%
5035856 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.61 49.0 4.35e-01 97.8% 69.3%
3474293 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 46.0 3.25e-01 82.6% 66.7%
4945034 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.60 47.0 3.15e-01 87.0% 91.7%
3779994 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.59 43.0 3.02e-01 80.4% 68.5%
4943853 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 42.0 3.06e-01 76.1% 78.6%
4995053 284.1.1.1 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.59 49.0 3.53e-01 100.0% 65.2%
5062839 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.58 46.0 2.99e-01 87.0% 94.5%
3494105 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.58 50.0 4.20e-01 100.0% 57.5%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 47.0 4.63e-01 100.0% 96.0%
3825952 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 45.0 3.70e-01 100.0% 45.7%
3727963 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.57 46.0 2.80e-01 93.5% 32.0%
4348505 7578.1.1.1 a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH 0.57 42.0 2.94e-01 80.4% 66.7%
4950851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.55e-01 93.5% 97.8%
3238189 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 41.0 3.21e-01 100.0% 32.1%
3244287 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.55 41.0 2.86e-01 82.6% 32.9%
3497850 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 40.0 2.87e-01 84.8% 24.8%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.25e-01 100.0% 34.2%
3487190 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.47e-01 100.0% 45.3%
4867320 221.1.1.66 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PIK3CG_ABD 0.53 44.0 3.44e-01 93.5% 76.5%
5052820 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.03e-01 100.0% 48.4%
3916476 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.52 38.0 3.35e-01 100.0% 49.4%
3780458 223.2.1.51 a+b three layers › Profilin-like › profilin-like › profilin-like › Njmu-R1 0.51 43.0 3.13e-01 100.0% 65.7%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.51 38.0 3.68e-01 95.7% 85.0%
D2 high residues 63-183
PDB