←Back to structures

MK524505.1__QBI97737.1__SEA_DOGFISH_48__00048

Bact-Vir

MK524505.1__QBI97737.1__SEA_DOGFISH_48__00048

Identity

Accession:
MK524505 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nyceiraevirus› Gordonia_phage_Dogfish

TaxID: 2530117

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-88
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.69 48.0 3.68e-01 85.4% 33.7%
3hjlA03 1.20.5.2020 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 51.0 5.15e-01 87.8% 95.1%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.65 50.0 3.04e-01 95.1% 40.2%
1znnA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 49.0 3.11e-01 100.0% 26.5%
1h6qA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.53 43.0 2.98e-01 100.0% 56.5%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3535784 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 71.0 6.92e-01 97.6% 86.7%
3890654 3266.1.1.1 ↗ alpha arrays › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1_C 0.76 63.0 5.99e-01 95.1% 80.0%
3670888 2003.1.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.63 54.0 3.19e-01 100.0% 17.0%