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MK524516.1__QBI98687.1__SEA_BOBBY_54__00054
Bact-VirMK524516.1__QBI98687.1__SEA_BOBBY_54__00054
Identity
- Accession:
- MK524516 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Taxonomy
TaxID: 2530120
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-52
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 53.0 | 3.97e-01 | 80.4% | 34.1% |
| 1y8fA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 53.0 | 5.39e-01 | 96.1% | 90.2% |
| 1v9xA00 | 3.30.1740.10 | Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type | 0.66 | 54.0 | 4.35e-01 | 100.0% | 75.4% |
| 1xa6A02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.65 | 51.0 | 4.72e-01 | 94.1% | 66.7% |
| 1vw4F01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.64 | 50.0 | 4.05e-01 | 100.0% | 46.2% |
| 2c1lA02 | 2.40.330.30 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › | 0.63 | 52.0 | 3.76e-01 | 100.0% | 92.9% |
| 1nqzA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 46.0 | 3.15e-01 | 98.0% | 24.0% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 54.0 | 4.09e-01 | 100.0% | 50.0% |
| 3ml4C01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 46.0 | 3.64e-01 | 100.0% | 41.7% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 48.0 | 3.68e-01 | 100.0% | 39.3% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 49.0 | 3.86e-01 | 100.0% | 45.4% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 40.0 | 3.06e-01 | 76.5% | 63.2% |
| 2i71A02 | 1.10.3740.10 | Mainly Alpha › Orthogonal Bundle › SSO1389-like fold › SSO1389-like domains | 0.57 | 41.0 | 2.98e-01 | 86.3% | 27.0% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 50.0 | 3.69e-01 | 100.0% | 55.9% |
| 2zuoA09 | 2.30.30.570 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.61e-01 | 74.5% | 61.9% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 46.0 | 4.03e-01 | 94.1% | 73.7% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.54 | 39.0 | 3.94e-01 | 82.4% | 80.8% |
| 4jpbW02 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.53 | 42.0 | 3.76e-01 | 92.2% | 88.6% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 2.75e-01 | 100.0% | 14.7% |
| 1w4tA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.53 | 41.0 | 3.28e-01 | 86.3% | 42.4% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.53 | 47.0 | 2.97e-01 | 100.0% | 91.5% |
| 2ztbA03 | 2.60.40.3040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 3.64e-01 | 84.3% | 70.8% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.52 | 37.0 | 3.09e-01 | 78.4% | 95.0% |
| 1n7oA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.52 | 40.0 | 3.38e-01 | 82.4% | 49.4% |
| 3ijlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 43.0 | 3.49e-01 | 100.0% | 50.9% |
| 2wzpR01 | 2.30.300.20 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 | 0.52 | 38.0 | 2.70e-01 | 84.3% | 73.5% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 45.0 | 3.04e-01 | 100.0% | 64.9% |
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.58e-01 | 76.5% | 85.7% |
| 5i0fB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 35.0 | 3.17e-01 | 78.4% | 47.6% |
| 1a6dA03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.51 | 35.0 | 2.62e-01 | 76.5% | 87.6% |
| 2vngA00 | 2.60.120.1060 | Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain | 0.50 | 38.0 | 2.81e-01 | 88.2% | 75.4% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604881 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.85 | 79.0 | 7.47e-01 | 100.0% | 86.4% |
| 3716804 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.84 | 77.0 | 6.40e-01 | 100.0% | 61.2% |
| 3580663 | 3991.1.1.2 ↗ | alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C | 0.82 | 74.0 | 5.01e-01 | 100.0% | 29.1% |
| 3566304 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.77 | 53.0 | 5.83e-01 | 72.5% | 92.5% |
| 3846283 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.76 | 55.0 | 5.63e-01 | 78.4% | 80.0% |
| 4977157 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.76 | 54.0 | 5.67e-01 | 78.4% | 86.7% |
| 3817641 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.73 | 58.0 | 5.59e-01 | 94.1% | 77.6% |
| 3829520 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.73 | 57.0 | 5.59e-01 | 94.1% | 81.8% |
| 3812427 | 376.1.3.42 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › C1-like_CT | 0.70 | 54.0 | 5.68e-01 | 88.2% | 97.8% |
| 3938379 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.69 | 50.0 | 4.73e-01 | 80.4% | 73.8% |
| 3232888 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.68 | 55.0 | 5.46e-01 | 100.0% | 85.5% |
| 4466003 | 376.1.3.44 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva | 0.68 | 50.0 | 4.65e-01 | 80.4% | 93.8% |
| 4963349 | 101.1.2.912 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5830 | 0.67 | 56.0 | 4.33e-01 | 100.0% | 41.7% |
| 3599588 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 55.0 | 4.30e-01 | 96.1% | 42.7% |
| 3540261 | 376.1.2.28 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-FCS | 0.65 | 55.0 | 5.43e-01 | 100.0% | 98.2% |
| 3809116 | 377.1.1.47 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT | 0.64 | 49.0 | 4.90e-01 | 94.1% | 83.3% |
| 3805371 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.64 | 51.0 | 4.91e-01 | 100.0% | 80.0% |
| 3806004 | 377.1.1.47 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT | 0.64 | 54.0 | 5.38e-01 | 100.0% | 96.2% |
| 3820282 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.64 | 49.0 | 5.13e-01 | 94.1% | 97.8% |
| 3832467 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.63 | 51.0 | 4.59e-01 | 94.1% | 64.0% |
| 4021809 | 12.1.1.35 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C | 0.63 | 45.0 | 3.85e-01 | 78.4% | 52.2% |
| 3321837 | 264.2.1.2 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Jiv90 | 0.62 | 47.0 | 3.99e-01 | 90.2% | 51.2% |
| 3811435 | 376.1.2.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT | 0.62 | 49.0 | 4.67e-01 | 100.0% | 75.4% |
| 3819551 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.61 | 50.0 | 3.15e-01 | 100.0% | 16.4% |
| 3716892 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.60 | 50.0 | 3.91e-01 | 100.0% | 48.0% |
| 4887702 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.60 | 48.0 | 3.85e-01 | 100.0% | 45.1% |
| 4982969 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.59 | 46.0 | 4.65e-01 | 84.3% | 86.0% |
| 5066523 | 3124.1.1.1 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC | 0.59 | 44.0 | 4.64e-01 | 80.4% | 91.1% |
| 5010584 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 42.0 | 3.07e-01 | 76.5% | 31.3% |
| 4856579 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 41.0 | 3.73e-01 | 76.5% | 52.9% |
| 3928653 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.58 | 37.0 | 2.49e-01 | 100.0% | 18.3% |
| 1130 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.57 | 40.0 | 3.06e-01 | 76.5% | 63.2% |
| 4494448 | 2008.1.1.183 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27227 | 0.57 | 49.0 | 3.67e-01 | 100.0% | 69.6% |
| 3227081 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 43.0 | 3.83e-01 | 86.3% | 70.0% |
| 3895159 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.05e-01 | 88.2% | 86.7% |
| 4297163 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.55 | 48.0 | 3.88e-01 | 100.0% | 58.1% |
| 3254360 | 2004.1.1.294 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ELP6 | 0.55 | 40.0 | 2.42e-01 | 86.3% | 11.9% |
| 5026119 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.55 | 49.0 | 3.88e-01 | 100.0% | 67.6% |
| 3235619 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 41.0 | 2.67e-01 | 88.2% | 25.6% |
| 4593896 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.55 | 36.0 | 3.72e-01 | 78.4% | 77.8% |
| 5027302 | 3124.1.1.0 ↗ | beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain | 0.54 | 40.0 | 4.05e-01 | 82.4% | 84.0% |
| 3668896 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 48.0 | 2.77e-01 | 100.0% | 14.7% |
| 4131098 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.53 | 45.0 | 3.69e-01 | 100.0% | 62.0% |
| 4599318 | 2.1.1.299 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 | 0.52 | 39.0 | 3.45e-01 | 84.3% | 93.8% |
| 4982370 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.52 | 34.0 | 3.60e-01 | 78.4% | 87.5% |
| 3584391 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.52 | 41.0 | 3.53e-01 | 96.1% | 61.1% |
| 3723425 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 37.0 | 2.37e-01 | 80.4% | 15.1% |
| 3696144 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 38.0 | 2.08e-01 | 80.4% | 4.9% |
| 4009644 | 2008.1.1.160 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF27151 | 0.50 | 41.0 | 2.96e-01 | 98.0% | 71.7% |