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MK524516.1__QBI98812.1__SEA_BOBBY_182__00182

Bact-Vir

MK524516.1__QBI98812.1__SEA_BOBBY_182__00182

Identity

Accession:
MK524516 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-45
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cjsC01 3.30.60.120 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.76 56.0 5.94e-01 80.0% 97.4%
5y20A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 48.0 4.60e-01 75.6% 61.5%
1r79A01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.69 50.0 4.69e-01 77.8% 63.6%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.68 50.0 4.29e-01 80.0% 50.0%
3t7lA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 50.0 4.25e-01 80.0% 51.4%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 53.0 4.29e-01 86.7% 45.3%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.66 50.0 4.74e-01 82.2% 75.9%
4zdtC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.65 52.0 4.56e-01 91.1% 60.0%
1a7iA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.64 46.0 4.28e-01 80.0% 61.7%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 41.0 4.12e-01 73.3% 63.8%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.63 49.0 4.97e-01 86.7% 93.0%
1wfkA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 51.0 4.25e-01 88.9% 58.4%
4ccgY00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 47.0 4.20e-01 82.2% 59.7%
3v43A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 44.0 3.38e-01 80.0% 31.2%
1iq0A02 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.59 40.0 3.10e-01 71.1% 80.0%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 44.0 3.17e-01 93.3% 77.6%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.14e-01 75.6% 63.3%
1k28D02 3.55.50.20 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.55 37.0 3.15e-01 75.6% 86.4%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.53 36.0 3.44e-01 71.1% 69.1%
2j4xA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 36.0 3.16e-01 71.1% 86.1%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 39.0 2.67e-01 82.2% 63.4%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 38.0 2.52e-01 97.8% 75.3%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 37.0 3.12e-01 84.4% 79.1%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.51 36.0 3.51e-01 88.9% 96.7%
4jaqA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 34.0 2.47e-01 71.1% 97.9%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636674 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.85 60.0 5.88e-01 80.0% 69.4%
3197592 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 60.0 5.27e-01 80.0% 52.3%
5071141 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.82 60.0 6.01e-01 77.8% 82.2%
3248965 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.82 57.0 5.14e-01 75.6% 55.0%
4990133 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 57.0 5.37e-01 80.0% 67.3%
3926338 376.1.1.94 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 0.75 56.0 4.38e-01 82.2% 38.9%
4977157 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 52.0 5.27e-01 77.8% 75.6%
3815246 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.74 55.0 4.94e-01 82.2% 56.9%
3816530 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.73 55.0 4.24e-01 82.2% 37.0%
3233807 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 55.0 4.73e-01 82.2% 52.9%
3336254 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 53.0 5.38e-01 80.0% 80.0%
3207695 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.72 53.0 5.14e-01 80.0% 72.0%
4266756 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.71 52.0 4.27e-01 80.0% 45.9%
3908093 377.9.1.8 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS 0.71 50.0 5.02e-01 77.8% 75.6%
3372361 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 50.0 5.22e-01 77.8% 87.5%
5036295 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.71 50.0 4.78e-01 77.8% 63.6%
3534273 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 52.0 5.37e-01 80.0% 90.0%
3481685 376.1.3.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.70 50.0 4.84e-01 75.6% 68.0%
2878975 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.70 50.0 4.28e-01 77.8% 47.4%
4025931 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.70 49.0 3.61e-01 77.8% 27.7%
3297352 376.1.3.24 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › NSD_PHD 0.70 51.0 4.99e-01 80.0% 74.0%
4942722 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 50.0 4.16e-01 77.8% 45.0%
3255059 375.1.1.297 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-MYND 0.69 46.0 5.09e-01 77.8% 93.9%
4359679 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.69 55.0 4.72e-01 86.7% 65.7%
3552232 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 49.0 3.51e-01 77.8% 25.2%
4298719 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.69 54.0 4.20e-01 86.7% 45.0%
3224881 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 49.0 3.54e-01 77.8% 26.7%
3611690 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.69 53.0 4.39e-01 84.4% 51.2%
3649017 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 52.0 4.15e-01 82.2% 41.1%
4670027 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 49.0 4.30e-01 77.8% 51.4%
3731209 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 49.0 3.84e-01 77.8% 36.0%
4023822 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.69 49.0 3.43e-01 77.8% 24.0%
4249713 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 53.0 3.34e-01 86.7% 16.8%
3680502 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.68 48.0 3.43e-01 77.8% 25.0%
4315109 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.68 53.0 4.51e-01 86.7% 58.7%
3499880 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 48.0 3.58e-01 77.8% 28.8%
3487815 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 48.0 4.50e-01 77.8% 60.0%
3242190 376.1.3.55 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PF27108 0.67 49.0 4.59e-01 80.0% 67.8%
3361724 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.67 50.0 4.03e-01 82.2% 53.3%
4562058 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.67 48.0 4.83e-01 77.8% 80.0%
3561887 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.67 53.0 4.29e-01 86.7% 49.4%
3656818 376.1.3.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.67 48.0 4.18e-01 77.8% 50.0%
3395083 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 47.0 5.01e-01 77.8% 97.1%
3600693 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 55.0 4.22e-01 95.6% 64.5%
3712912 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 49.0 4.61e-01 80.0% 65.5%
4979944 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.66 49.0 5.20e-01 80.0% 90.0%
3688523 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 50.0 3.92e-01 82.2% 41.1%
4000128 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 52.0 4.21e-01 86.7% 45.9%
3738593 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.66 55.0 4.63e-01 93.3% 57.3%
3737200 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.66 49.0 4.45e-01 80.0% 61.7%
3385531 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.66 45.0 4.51e-01 77.8% 73.3%
3686834 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 47.0 4.08e-01 80.0% 48.0%
3751964 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.65 47.0 3.88e-01 80.0% 42.4%
3423212 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 46.0 3.94e-01 80.0% 45.0%
3816446 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.64 47.0 4.08e-01 80.0% 51.4%
5047375 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.64 43.0 4.14e-01 77.8% 60.0%
3489513 376.1.3.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H 0.63 47.0 4.28e-01 80.0% 60.0%
4957710 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.63 43.0 4.34e-01 77.8% 73.3%
3943640 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 44.0 4.34e-01 75.6% 70.0%
5031930 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.63 46.0 4.79e-01 82.2% 95.0%
5059659 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 46.0 4.83e-01 80.0% 90.0%
3732738 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 45.0 4.19e-01 82.2% 65.0%
4011643 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 45.0 3.65e-01 82.2% 44.4%
4976002 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 41.0 4.25e-01 75.6% 80.0%
4959094 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 45.0 4.25e-01 82.2% 67.3%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.60 42.0 4.10e-01 77.8% 68.0%
3858618 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 43.0 3.69e-01 82.2% 46.3%
4981099 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.59 39.0 4.06e-01 75.6% 80.0%
3255991 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.57 39.0 2.46e-01 77.8% 22.3%
4998399 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.56 45.0 2.90e-01 95.6% 69.0%
3503113 377.1.1.5 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 38.0 3.04e-01 77.8% 31.4%
3489619 109.4.1.872 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS1_INTS2-bd 0.56 41.0 2.32e-01 82.2% 16.4%
4935806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.01e-01 71.1% 63.0%
3931367 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 44.0 3.79e-01 97.8% 93.8%
5056705 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 41.0 3.49e-01 88.9% 81.2%
3885392 376.1.3.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.51 37.0 3.51e-01 80.0% 65.5%
5045773 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.50 34.0 3.00e-01 73.3% 42.5%