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MK524530.1__QBJ00241.1__SEA_PHARAOH_52__00051

Bact-Vir

MK524530.1__QBJ00241.1__SEA_PHARAOH_52__00051

Identity

Accession:
MK524530 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pharaohvirus› Mycobacterium_phage_Pharaoh

TaxID: 2530140

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-86
PDB
Domain cluster: rep: MH153804.1__AWN03701.1__PBI_JACE_81__00081__D49-125
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19905.5 best DUF6378 87.0 1.10e-24 100.0% 96.3%
D2 high residues 99-169
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 4.08e-01 85.9% 77.4%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.61 45.0 4.49e-01 97.2% 76.7%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 49.0 4.33e-01 88.7% 100.0%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.12e-01 87.3% 84.0%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 49.0 4.16e-01 88.7% 98.3%
3i24B00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.61 45.0 3.66e-01 80.3% 93.5%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 53.0 4.44e-01 100.0% 69.4%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 51.0 4.43e-01 97.2% 80.7%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 42.0 3.67e-01 76.1% 79.1%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 52.0 3.92e-01 100.0% 77.4%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 47.0 3.98e-01 88.7% 97.5%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 45.0 3.03e-01 84.5% 80.5%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 45.0 4.01e-01 87.3% 88.7%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 45.0 3.67e-01 88.7% 71.6%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.57 47.0 4.11e-01 91.5% 97.2%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 49.0 3.26e-01 98.6% 92.1%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 4.32e-01 88.7% 94.7%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 49.0 3.20e-01 100.0% 72.2%
4ld1A00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.55 41.0 3.18e-01 80.3% 40.8%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 38.0 3.39e-01 76.1% 71.4%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 2.97e-01 94.4% 85.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 43.0 3.80e-01 88.7% 86.7%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 46.0 3.15e-01 97.2% 81.2%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 44.0 2.90e-01 94.4% 69.5%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 43.0 3.51e-01 95.8% 96.0%
4jonC00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.58e-01 91.5% 73.7%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 39.0 3.42e-01 85.9% 77.3%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.27e-01 100.0% 81.5%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 41.0 3.58e-01 87.3% 86.2%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 37.0 2.49e-01 77.5% 94.4%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.51 33.0 3.51e-01 77.5% 77.0%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.50 41.0 4.06e-01 97.2% 84.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570970 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.70 55.0 3.93e-01 85.9% 53.3%
3597350 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.68 50.0 4.71e-01 76.1% 73.5%
3348893 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.64 48.0 4.39e-01 80.3% 77.9%
1117317 3417.1.1.1 ↗ a+b three layers › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › Surfactant protein C BRICHOS domain › BRICHOS 0.62 44.0 4.65e-01 77.5% 84.1%
4861072 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.60 43.0 4.08e-01 77.5% 64.6%
3629315 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.44e-01 84.5% 63.8%
4777175 5.1.2.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL 0.60 44.0 4.20e-01 80.3% 67.1%
3241605 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.11e-01 88.7% 87.7%
3228997 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.58 50.0 3.98e-01 97.2% 67.6%
3362446 5.1.3.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › RCC1_2 0.58 46.0 2.99e-01 87.3% 81.8%
3402026 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.58 48.0 2.95e-01 95.8% 78.3%
3711004 77.3.1.1 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.57 41.0 3.41e-01 80.3% 43.2%
3192104 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.57 43.0 3.62e-01 81.7% 82.4%
4519672 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.57 49.0 4.03e-01 100.0% 81.4%
4027723 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 42.0 4.25e-01 80.3% 87.1%
3697213 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.56 48.0 3.07e-01 94.4% 95.1%
4023238 220.1.1.195 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.56 44.0 3.45e-01 88.7% 67.9%
3808086 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.55 41.0 3.34e-01 80.3% 86.4%
3884681 292.2.1.10 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N 0.55 43.0 3.92e-01 85.9% 66.3%
3265365 5.1.4.255 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, WD40_RLD 0.54 41.0 2.64e-01 84.5% 91.3%
3492298 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 45.0 2.77e-01 94.4% 64.3%
4238933 5.1.4.49 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PSII_BNR 0.53 46.0 3.01e-01 94.4% 69.5%
None — 0.53 39.0 2.90e-01 80.3% 99.5%
3961261 5.1.4.471 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NHL 0.52 46.0 3.21e-01 95.8% 80.9%
None — 0.52 44.0 3.65e-01 93.0% 73.6%
3643744 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.51 41.0 2.82e-01 93.0% 33.1%
4012405 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 42.0 2.63e-01 93.0% 34.8%
4934826 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.97e-01 100.0% 69.2%