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MK533143.1__QBX06350.1__API480_59__00059
Bact-VirMK533143.1__QBX06350.1__API480_59__00059
Identity
- Accession:
- MK533143 ↗
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Taxonomy
TaxID: 2530020
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 174-226
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 44.0 | 3.27e-01 | 71.7% | 45.8% |
| 1ss4A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.64 | 46.0 | 3.45e-01 | 81.1% | 43.0% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.60 | 45.0 | 3.14e-01 | 83.0% | 29.6% |
| 2vhlA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 43.0 | 2.82e-01 | 100.0% | 85.7% |
| 5k6uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 3.55e-01 | 96.2% | 95.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013019 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 59.0 | 6.07e-01 | 77.4% | 90.0% |
| 4933052 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 53.0 | 5.87e-01 | 77.4% | 97.5% |
| 4976822 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.74 | 50.0 | 3.79e-01 | 71.7% | 51.2% |
| 4999913 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 50.0 | 3.78e-01 | 71.7% | 51.2% |
| 5025169 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 50.0 | 3.69e-01 | 71.7% | 45.9% |
| 5038610 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 50.0 | 3.64e-01 | 71.7% | 44.3% |
| 4980462 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 50.0 | 3.75e-01 | 71.7% | 49.6% |
| 4943890 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 50.0 | 3.66e-01 | 71.7% | 47.4% |
| 5008323 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.73 | 50.0 | 3.72e-01 | 71.7% | 46.5% |
| 5067766 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 3.69e-01 | 71.7% | 48.8% |
| 5011984 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 3.76e-01 | 71.7% | 52.5% |
| 5012781 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.72 | 49.0 | 3.67e-01 | 71.7% | 48.5% |
| 5053183 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 3.70e-01 | 71.7% | 51.2% |
| 4967975 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 49.0 | 3.66e-01 | 71.7% | 47.7% |
| 4967267 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 49.0 | 3.60e-01 | 71.7% | 45.5% |
| 5027082 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 48.0 | 3.65e-01 | 71.7% | 52.0% |
| 5036890 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 48.0 | 3.65e-01 | 71.7% | 50.4% |
| 4994971 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 48.0 | 3.61e-01 | 71.7% | 50.4% |
| 5042801 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 48.0 | 3.57e-01 | 71.7% | 49.2% |
| 5048438 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.69 | 48.0 | 3.55e-01 | 71.7% | 47.4% |
| 4959206 | 2.1.1.51 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 | 0.69 | 47.0 | 3.52e-01 | 71.7% | 45.9% |
| 3316230 | 375.1.1.84 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_15 | 0.66 | 52.0 | 5.02e-01 | 84.9% | 98.3% |
| 5011867 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.65 | 44.0 | 3.11e-01 | 71.7% | 73.8% |
D2
medium
residues 1-60
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 48.0 | 4.20e-01 | 75.0% | 50.5% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 48.0 | 4.37e-01 | 95.0% | 58.0% |
| 3khyA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 38.0 | 2.82e-01 | 88.3% | 43.9% |