←Back to structures

MK533143.1__QBX06355.1__API480_60__00060

Bact-Vir

MK533143.1__QBX06355.1__API480_60__00060

Identity

Accession:
MK533143 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paenibacillus_phage_vB_PlaP_API480

TaxID: 2530020

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-73
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3al9A02 3.30.1680.10 Alpha Beta › 2-Layer Sandwich › ligand-binding face of the semaphorins, domain 2 › ligand-binding face of the semaphorins, domain 2 0.62 41.0 4.20e-01 73.2% 72.2%
3okyA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.48e-01 100.0% 95.6%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 40.0 2.82e-01 85.7% 80.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3777517 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.62 43.0 4.38e-01 82.1% 76.4%
3716040 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 4.00e-01 91.1% 92.2%
3908609 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.57 40.0 3.77e-01 87.5% 60.0%
3883682 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.44e-01 92.9% 89.0%
3868228 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.56 47.0 3.65e-01 98.2% 87.4%
5019399 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.55 39.0 3.92e-01 82.1% 76.4%
5079168 810.1.1.3 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 0.54 42.0 3.23e-01 89.3% 95.2%
4602865 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.52 39.0 2.96e-01 87.5% 43.8%
4552859 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.51 40.0 2.66e-01 85.7% 33.3%
D2 medium residues 79-132
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.75 51.0 4.71e-01 70.4% 59.7%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 47.0 3.92e-01 75.9% 81.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010982 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.94 67.0 6.69e-01 74.1% 72.7%
5062475 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.91 68.0 5.95e-01 77.8% 56.0%
3330005 101.1.11.3 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP 0.89 64.0 7.13e-01 81.5% 95.3%
4797237 101.1.11.2 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.88 61.0 6.77e-01 74.1% 90.7%
5018588 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.80 67.0 6.51e-01 90.7% 88.3%
3361374 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 2.79e-01 83.3% 62.2%