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MK533143.1__QBX06367.1__API480_26__00026

Bact-Vir

MK533143.1__QBX06367.1__API480_26__00026

Identity

Accession:
MK533143 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Paenibacillus_phage_vB_PlaP_API480

TaxID: 2530020

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-107
PDB
Domain cluster: rep: OK896991.1__UDY80742.1__X__00073__D5-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02452.24 best PemK_toxin 83.4 1.80e-23 100.0% 94.5%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.95 91.0 8.86e-01 100.0% 93.3%
1ub4A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.94 83.0 8.24e-01 100.0% 88.3%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.91 87.0 8.15e-01 100.0% 88.8%
5uctB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.88 77.0 7.76e-01 100.0% 92.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 40.0 5.16e-01 82.8% 98.3%
2xdbA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.70 63.0 5.34e-01 100.0% 82.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 44.0 4.95e-01 86.9% 87.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.77e-01 82.8% 100.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.58 49.0 4.31e-01 91.9% 80.8%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 34.0 4.08e-01 80.8% 96.7%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 32.0 2.93e-01 98.0% 43.2%
3wa2X02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.85e-01 77.8% 82.4%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.51 39.0 4.01e-01 83.8% 83.2%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.37e-01 75.8% 72.4%
2b1xA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.50 38.0 2.77e-01 83.8% 63.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587639 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.99 96.0 9.26e-01 100.0% 91.7%
2702587 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.98 95.0 8.98e-01 100.0% 88.4%
3964273 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.97 95.0 8.88e-01 100.0% 90.4%
4267554 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.97 93.0 8.84e-01 100.0% 91.2%
3503901 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.94 91.0 8.44e-01 100.0% 87.3%
2832038 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.94 90.0 8.46e-01 100.0% 87.0%
4667326 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.92 88.0 8.30e-01 100.0% 89.6%
2643543 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.92 88.0 8.08e-01 100.0% 87.7%
5045554 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.91 88.0 8.16e-01 100.0% 87.4%
1109151 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.91 87.0 8.04e-01 100.0% 85.8%
2125775 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.90 77.0 7.56e-01 100.0% 84.6%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.89 84.0 8.20e-01 100.0% 92.4%
3951374 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 80.0 7.89e-01 100.0% 90.5%
4928262 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 84.0 8.06e-01 100.0% 93.6%
2046239 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 77.0 7.76e-01 100.0% 92.0%
3955085 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.88 79.0 7.92e-01 100.0% 94.0%
3589640 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.87 83.0 7.95e-01 100.0% 91.8%
3965064 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.86 82.0 7.44e-01 100.0% 88.8%
3290347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 74.0 7.48e-01 100.0% 91.8%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 76.0 7.59e-01 100.0% 93.0%
4034169 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.85 80.0 6.92e-01 100.0% 72.2%
5013823 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 79.0 7.12e-01 100.0% 95.4%
5065801 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 78.0 7.62e-01 100.0% 92.4%
5062749 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.84 79.0 7.53e-01 100.0% 90.4%
3955877 4.1.1.432 ↗ beta barrels › SH3 › SH3 › SH3 › PF27466 0.82 72.0 7.17e-01 100.0% 92.0%
4938225 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.80 75.0 7.35e-01 100.0% 93.3%
4961922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 73.0 7.11e-01 100.0% 90.8%
4969376 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.78 72.0 6.80e-01 100.0% 91.5%
3600929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.56e-01 83.8% 75.3%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.60 40.0 4.74e-01 82.8% 98.5%
3911248 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 46.0 4.84e-01 84.8% 94.4%
3612182 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.73e-01 82.8% 94.4%
3701745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.63e-01 93.9% 77.5%
4010875 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 3.88e-01 88.9% 85.0%
3687023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.17e-01 82.8% 84.0%
3777599 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.37e-01 75.8% 69.3%
4962626 304.24.1.41 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DmsR_N 0.51 36.0 3.21e-01 73.7% 62.8%
3722380 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.50 39.0 3.06e-01 87.9% 38.6%