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MK552105.1__QBZ71323.1__X__00004

Bact-Vir

MK552105.1__QBZ71323.1__X__00004

Identity

Accession:
MK552105 ↗
Kingdom:
phage

Quality

86.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Jahatvirus› Escherichia_phage_Jahat_MG145

TaxID: 2562601

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 34.0 4.35e-01 87.9% 93.9%
2xi9A02 2.30.30.670 Mainly Beta › Roll › SH3 type barrels. › Thioester domain 0.65 47.0 4.02e-01 75.8% 84.3%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 52.0 4.23e-01 100.0% 99.3%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 51.0 4.11e-01 98.5% 85.1%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 51.0 4.16e-01 100.0% 94.4%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 4.12e-01 98.5% 94.3%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 50.0 4.07e-01 98.5% 97.9%
3cloC01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.27e-01 81.8% 85.0%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 3.77e-01 83.3% 77.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 3.82e-01 98.5% 66.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 4.05e-01 92.4% 76.1%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.56 41.0 4.48e-01 80.3% 100.0%
2ktsA01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 4.00e-01 93.9% 100.0%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.78e-01 84.8% 33.5%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.56 48.0 4.05e-01 100.0% 70.9%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 41.0 2.62e-01 84.8% 24.0%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.55 41.0 4.17e-01 95.5% 83.3%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 43.0 3.52e-01 89.4% 68.7%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 38.0 3.80e-01 92.4% 76.1%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 4.34e-01 89.4% 96.7%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.52 40.0 3.42e-01 89.4% 83.7%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.54e-01 97.0% 89.8%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.76e-01 87.9% 26.1%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.78e-01 77.3% 87.9%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.52 41.0 3.49e-01 95.5% 63.3%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 4.04e-01 93.9% 87.3%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.51 42.0 4.06e-01 98.5% 91.1%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 38.0 2.50e-01 83.3% 27.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4131958 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.63 52.0 4.23e-01 95.5% 94.1%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 43.0 4.05e-01 83.3% 62.5%
958448 6.1.1.9 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Botulinum_HA-17 0.60 47.0 3.76e-01 89.4% 71.5%
1936764 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.22e-01 81.8% 85.1%
3256385 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.57 52.0 4.17e-01 100.0% 78.4%
3079243 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.56 49.0 4.54e-01 100.0% 82.4%
3241447 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 42.0 3.50e-01 81.8% 93.3%
4441857 3347.1.1.6 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531, TEN_YD-shell 0.56 44.0 2.76e-01 87.9% 33.1%
3599142 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 4.40e-01 83.3% 91.7%
2106031 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 42.0 4.37e-01 83.3% 93.2%
1949626 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 42.0 4.37e-01 83.3% 93.2%
5022923 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 40.0 3.71e-01 80.3% 70.6%
3641913 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.54 42.0 4.03e-01 84.8% 76.0%
4965926 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 41.0 4.09e-01 86.4% 95.7%
4030567 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.53 41.0 2.58e-01 87.9% 96.9%
3391006 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.59e-01 83.3% 19.7%
4176974 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.53 42.0 4.43e-01 93.9% 100.0%
3679125 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 40.0 2.97e-01 86.4% 30.6%
3227319 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.52 44.0 3.71e-01 95.5% 89.6%
4525958 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.52 43.0 3.67e-01 92.4% 69.4%
4928472 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 40.0 3.80e-01 84.8% 96.2%
4933326 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 40.0 3.67e-01 84.8% 87.5%
3731318 9.16.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 0.50 41.0 3.25e-01 98.5% 93.9%
3813362 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.50 41.0 3.04e-01 95.5% 70.3%
D2 high residues 73-124
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_1208361_prodigal-single.1__X__X__00244__D2-57