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MK552141.1__QBQ74384.1__BcepSauron_004__00004

Bact-Vir

MK552141.1__QBQ74384.1__BcepSauron_004__00004

Identity

Accession:
MK552141 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-42
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.82 70.0 5.83e-01 100.0% 68.2%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.80 61.0 4.58e-01 89.2% 46.5%
4ijdA02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.79 55.0 5.84e-01 78.4% 87.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.79 64.0 6.34e-01 94.6% 94.9%
5a35A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.73 49.0 3.45e-01 70.3% 78.6%
7oslA02 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.72 43.0 3.08e-01 86.5% 21.0%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.72 58.0 4.18e-01 97.3% 34.5%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.71 47.0 2.99e-01 100.0% 14.2%
2jwkA00 3.30.420.270 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.70 56.0 4.70e-01 100.0% 51.4%
1k0eB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.68 54.0 3.15e-01 97.3% 8.9%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.68 48.0 3.34e-01 100.0% 23.3%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 57.0 3.98e-01 100.0% 30.2%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 47.0 3.21e-01 97.3% 19.6%
3h5aD01 3.90.930.70 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 54.0 4.18e-01 100.0% 40.9%
3aiiA03 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 43.0 3.34e-01 73.0% 34.8%
4ztkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 49.0 2.94e-01 100.0% 11.9%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 3.78e-01 78.4% 62.1%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.50e-01 100.0% 96.1%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 47.0 4.04e-01 100.0% 59.2%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.62 51.0 3.72e-01 100.0% 33.9%
4dguA02 2.60.40.2670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 47.0 3.48e-01 86.5% 82.7%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 50.0 4.39e-01 94.6% 75.9%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.61 52.0 3.27e-01 100.0% 32.9%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 48.0 3.66e-01 94.6% 75.8%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 52.0 3.38e-01 100.0% 23.6%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.60 45.0 2.72e-01 78.4% 17.3%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 47.0 3.90e-01 91.9% 65.7%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.59 49.0 3.33e-01 100.0% 96.2%
5kmpB00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 49.0 2.88e-01 100.0% 80.0%
1o22A00 3.90.1000.10 Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 0.58 49.0 3.33e-01 100.0% 61.1%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.58 40.0 3.52e-01 75.7% 60.0%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.82e-01 97.3% 55.6%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 47.0 2.78e-01 100.0% 19.2%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.30e-01 100.0% 74.5%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 48.0 2.78e-01 100.0% 68.3%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.55 41.0 3.61e-01 89.2% 66.7%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.75e-01 97.3% 54.1%
3pufL00 2.40.128.680 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.11e-01 97.3% 53.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 2.99e-01 86.5% 60.8%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 41.0 3.39e-01 91.9% 46.7%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.53 37.0 2.67e-01 78.4% 64.5%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.52 36.0 2.45e-01 70.3% 32.9%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 42.0 3.10e-01 97.3% 46.2%
2olnA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 2.86e-01 100.0% 30.1%
6sakC00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 41.0 3.24e-01 100.0% 76.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959171 4029.1.1.0 a+b duplicates or obligate multimers › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like › SSH domain in siroheme synthase middle domains-like 0.90 69.0 6.74e-01 83.8% 95.0%
3723017 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.86 70.0 5.81e-01 91.9% 52.3%
4981099 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.86 61.0 5.99e-01 75.7% 70.0%
3475436 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.83 72.0 5.78e-01 97.3% 55.7%
3570260 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.81 58.0 4.97e-01 83.8% 48.3%
3927790 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.80 70.0 6.53e-01 97.3% 80.0%
3566649 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.80 58.0 5.56e-01 81.1% 66.7%
3996291 4351.1.1.1 alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.79 67.0 4.14e-01 100.0% 18.6%
3869223 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.79 66.0 5.19e-01 97.3% 63.7%
3546841 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 55.0 5.45e-01 75.7% 70.0%
4943801 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 54.0 5.28e-01 73.0% 67.5%
3566388 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.78 62.0 5.91e-01 89.2% 79.1%
4669982 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 59.0 5.37e-01 83.8% 62.0%
5022340 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 59.0 5.04e-01 94.6% 58.6%
3964732 377.1.1.119 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ATPase-cat_bd 0.77 60.0 5.45e-01 86.5% 64.0%
3787709 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 61.0 6.07e-01 94.6% 92.5%
3542422 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.76 61.0 6.08e-01 97.3% 90.0%
3483955 386.1.1.6 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.76 63.0 4.95e-01 100.0% 44.7%
3861324 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.75 63.0 5.78e-01 97.3% 78.0%
3612607 316.1.1.25 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.75 50.0 3.28e-01 70.3% 38.0%
3607176 101.17.1.4 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.69 49.0 3.77e-01 100.0% 34.1%
4504655 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.69 48.0 2.72e-01 83.8% 7.0%
3931934 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.68 58.0 4.89e-01 100.0% 80.0%
4276957 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 51.0 4.54e-01 83.8% 56.4%
5016928 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.68 59.0 3.61e-01 100.0% 46.8%
4380974 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.68 49.0 3.34e-01 86.5% 20.6%
4041865 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.68 58.0 3.32e-01 97.3% 21.2%
2770744 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.67 49.0 3.07e-01 91.9% 14.4%
3602759 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 53.0 4.62e-01 100.0% 58.3%
4978597 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.66 48.0 3.08e-01 100.0% 16.2%
4351809 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 49.0 4.24e-01 83.8% 51.7%
4262261 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 50.0 4.42e-01 83.8% 56.4%
3280386 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 49.0 4.31e-01 83.8% 56.4%
4307219 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 49.0 4.36e-01 83.8% 58.2%
5026090 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 47.0 3.86e-01 83.8% 74.7%
4936221 2003.1.7.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › NAD_kinase_C 0.64 49.0 3.42e-01 100.0% 34.4%
4174179 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.63 48.0 4.38e-01 83.8% 62.0%
4548409 375.13.1.1 few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.63 47.0 4.45e-01 89.2% 70.0%
5042982 7516.1.1.24 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.63 50.0 3.10e-01 91.9% 93.2%
3793075 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 50.0 3.51e-01 94.6% 62.2%
3288575 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.63 53.0 3.01e-01 100.0% 42.8%
5015831 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.62 47.0 3.19e-01 83.8% 39.3%
3973146 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 46.0 4.22e-01 83.8% 62.0%
5028765 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 50.0 3.44e-01 100.0% 84.7%
4203433 7516.1.1.5 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD 0.61 52.0 3.24e-01 100.0% 53.5%
3960493 1001.1.1.0 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.60 46.0 3.18e-01 89.2% 24.8%
3716408 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 3.08e-01 100.0% 31.6%
3601402 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 49.0 2.93e-01 100.0% 24.8%
4454944 101.1.2.468 alpha arrays › HTH › HTH › winged helix domain › McbB 0.60 49.0 4.01e-01 100.0% 87.5%
4093923 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 43.0 3.88e-01 83.8% 58.2%
3971285 2485.1.1.40 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 0.58 48.0 3.53e-01 100.0% 74.3%
3270686 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.57 40.0 3.23e-01 78.4% 75.0%
5077089 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.64e-01 91.9% 77.1%
4937431 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 46.0 3.04e-01 100.0% 52.7%
3967527 4216.1.1.1 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.51 38.0 2.56e-01 86.5% 34.9%