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MK552327.1__QBJ02642.1__PSA21_114__00114

Bact-Vir

MK552327.1__QBJ02642.1__PSA21_114__00114

Identity

Accession:
MK552327 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Tepukevirus› Pseudomonas_phage_Psa21

TaxID: 2530023

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-126
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5mmiU01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 30.0 3.52e-01 100.0% 54.9%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.65 49.0 4.56e-01 79.5% 71.7%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.64 33.0 3.56e-01 99.1% 56.9%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 26.0 3.13e-01 100.0% 54.3%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.63 43.0 4.50e-01 70.1% 75.2%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.59 40.0 3.88e-01 70.1% 82.7%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 25.0 3.00e-01 100.0% 59.5%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 27.0 3.27e-01 100.0% 68.0%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.54 38.0 3.81e-01 73.5% 100.0%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 40.0 3.64e-01 79.5% 92.6%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 28.0 3.46e-01 75.2% 83.8%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.53 31.0 3.60e-01 81.2% 81.7%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 33.0 3.41e-01 77.8% 65.5%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 39.0 3.98e-01 79.5% 83.0%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.53e-01 85.5% 76.8%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.51 34.0 3.64e-01 75.2% 77.1%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951532 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.63 33.0 4.45e-01 71.8% 100.0%
3916046 6155.1.1.2 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.62 43.0 4.43e-01 81.2% 74.5%
4026168 101.1.21.1 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N 0.61 46.0 3.60e-01 80.3% 88.9%
4106251 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.58 45.0 3.42e-01 81.2% 43.6%
3283002 601.1.1.82 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF8318 0.58 44.0 4.14e-01 81.2% 98.0%
3734404 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 36.0 4.27e-01 70.9% 91.3%
3272819 3919.1.1.2 ↗ alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.57 46.0 4.73e-01 93.2% 90.9%
4948593 1075.5.1.16 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › PelG 0.57 48.0 3.38e-01 95.7% 86.7%
3276589 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 42.0 2.93e-01 79.5% 27.9%
3846709 109.4.1.2384 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPG48, TPR_AP5Z1 0.55 38.0 2.71e-01 71.8% 46.9%
3623750 1188.1.1.1 ↗ alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Zip 0.55 44.0 3.50e-01 88.0% 54.0%
3440212 601.18.1.13 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › Vwaint 0.55 41.0 4.29e-01 77.8% 89.5%
3641586 604.12.1.48 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vwaint 0.54 40.0 4.09e-01 76.9% 82.6%
None — 0.54 44.0 3.96e-01 85.5% 67.1%
3388149 129.1.1.5 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct 0.53 40.0 3.57e-01 80.3% 78.8%
3799103 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.52 39.0 3.82e-01 79.5% 90.8%
3747438 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.51 42.0 2.71e-01 94.0% 47.6%
5006159 304.31.1.1 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › HMG-CoA_red 0.51 38.0 2.96e-01 78.6% 46.5%
3718740 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.50 39.0 4.02e-01 94.9% 85.2%
3702713 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 3.67e-01 93.2% 64.5%