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MK552327.1__QBJ02882.1__PSA21_356__00356

Bact-Vir

MK552327.1__QBJ02882.1__PSA21_356__00356

Identity

Accession:
MK552327 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Tepukevirus› Pseudomonas_phage_Psa21

TaxID: 2530023

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-45
PDB
Domain cluster: rep: OR228460.1__WNV47690.1__X__00016__D3-46
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 59.0 4.52e-01 100.0% 44.1%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.69 59.0 5.73e-01 100.0% 92.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 5.37e-01 100.0% 68.2%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.68 60.0 4.40e-01 100.0% 41.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 47.0 3.62e-01 100.0% 31.7%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 58.0 4.06e-01 100.0% 34.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 5.15e-01 100.0% 69.7%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 56.0 4.40e-01 100.0% 44.9%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.64 54.0 3.44e-01 100.0% 22.5%
3aqpA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 53.0 3.70e-01 100.0% 50.6%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.63 46.0 3.76e-01 79.5% 49.4%
1r85A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 44.0 2.58e-01 75.0% 96.8%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 51.0 4.21e-01 100.0% 57.3%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 40.0 3.30e-01 100.0% 34.9%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 48.0 3.88e-01 100.0% 42.9%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.70e-01 100.0% 41.1%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 48.0 3.66e-01 100.0% 46.5%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 3.53e-01 100.0% 38.5%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.60 47.0 3.31e-01 100.0% 76.0%
3gwaA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 46.0 3.29e-01 95.5% 39.8%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.59 50.0 3.63e-01 100.0% 99.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 48.0 3.36e-01 100.0% 45.5%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 45.0 3.18e-01 100.0% 25.8%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 44.0 3.60e-01 100.0% 87.3%
3v67A01 3.30.450.210 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Two-component sensor protein CpxA, periplasmic domain 0.57 43.0 3.28e-01 86.4% 81.8%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.53e-01 100.0% 33.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 46.0 3.50e-01 97.7% 80.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 48.0 3.34e-01 100.0% 27.7%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 3.35e-01 100.0% 38.0%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 48.0 4.59e-01 97.7% 100.0%
4umgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.47e-01 100.0% 40.2%
4kh9A03 2.60.120.1370 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.50e-01 100.0% 50.4%
1u04A03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 42.0 2.83e-01 84.1% 86.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.55 41.0 3.81e-01 100.0% 62.3%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.68e-01 100.0% 48.5%
8begA03 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.22e-01 100.0% 35.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 47.0 3.42e-01 100.0% 38.2%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.54 44.0 3.55e-01 100.0% 52.9%
2pjhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 3.88e-01 100.0% 88.2%
3rghA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.44e-01 100.0% 42.7%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 42.0 2.96e-01 100.0% 25.5%
4lesA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.08e-01 93.2% 44.4%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.42e-01 100.0% 49.0%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 47.0 2.83e-01 100.0% 35.0%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.17e-01 100.0% 36.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740637 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.80 53.0 5.84e-01 97.7% 85.7%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.73 61.0 5.93e-01 100.0% 86.0%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.73 61.0 6.10e-01 100.0% 95.6%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.72 61.0 6.09e-01 100.0% 95.6%
3968122 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.71 59.0 5.92e-01 100.0% 95.6%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 6.21e-01 100.0% 100.0%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.65 57.0 5.33e-01 100.0% 94.5%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 52.0 5.09e-01 100.0% 96.0%
3721040 4176.1.1.2 ↗ a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.63 52.0 3.33e-01 100.0% 18.0%
3286798 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 45.0 3.33e-01 79.5% 83.2%
3958896 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.61 50.0 4.65e-01 100.0% 73.3%
4946840 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 3.17e-01 75.0% 33.0%
3392944 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 3.86e-01 100.0% 45.0%
5082483 4038.1.1.1 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal 0.59 46.0 3.07e-01 90.9% 69.7%
3728216 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.58 48.0 2.79e-01 100.0% 10.5%
1514578 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.57 49.0 3.32e-01 100.0% 36.6%
4941559 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.75e-01 97.7% 100.0%
3998356 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 47.0 4.73e-01 100.0% 97.8%
5030904 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.56 48.0 4.16e-01 100.0% 95.7%
3630069 223.1.1.101 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.56 40.0 2.30e-01 84.1% 94.8%
4968195 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.41e-01 100.0% 44.0%
1937230 2010.1.1.1 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.54 42.0 2.95e-01 100.0% 25.0%
3407523 244.1.1.9 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GMC_oxred_C 0.54 41.0 2.78e-01 100.0% 79.6%
4930532 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.16e-01 97.7% 58.2%
3991455 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.53 40.0 3.85e-01 100.0% 69.1%
3475783 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.51 36.0 3.67e-01 90.9% 100.0%
3385724 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.45e-01 100.0% 52.6%