←Back to structures
MK554696.1__QBJ04076.1__X__00059
Bact-VirMK554696.1__QBJ04076.1__X__00059
Identity
- Accession:
- MK554696 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 2530024
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-105
Domain cluster:
rep: MW460247.1__QRE00508.1__X__00034__D8-134
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 30.0 | 7.20e-07 | 79.8% | 91.0% |
D2
high
residues 118-201
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tbrR01 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.63 | 34.0 | 4.27e-01 | 70.2% | 86.3% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 32.0 | 3.76e-01 | 71.4% | 88.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3998575 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 41.0 | 3.98e-01 | 71.4% | 71.6% |
| 3407954 | 386.1.1.24 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_4 | 0.56 | 39.0 | 3.83e-01 | 71.4% | 87.8% |
| 3920052 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 41.0 | 3.54e-01 | 78.6% | 98.5% |
| 3939849 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.54 | 40.0 | 3.30e-01 | 78.6% | 54.2% |
D3
high
residues 208-269
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ltuA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 38.0 | 3.85e-01 | 75.8% | 58.1% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.87e-01 | 93.5% | 85.2% |
| 3h5tA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 38.0 | 4.29e-01 | 74.2% | 85.1% |
| 5tjjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.58e-01 | 96.8% | 76.7% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.63e-01 | 95.2% | 85.9% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.56 | 37.0 | 4.14e-01 | 91.9% | 91.3% |
| 4o5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 47.0 | 4.52e-01 | 96.8% | 81.7% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.17e-01 | 96.8% | 68.3% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 45.0 | 4.48e-01 | 93.5% | 87.3% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.25e-01 | 96.8% | 76.7% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.55 | 36.0 | 3.88e-01 | 93.5% | 82.0% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.54 | 38.0 | 3.62e-01 | 74.2% | 75.3% |
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 4.43e-01 | 96.8% | 84.3% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.40e-01 | 96.8% | 98.1% |
| 2zxeA03 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 42.0 | 3.21e-01 | 93.5% | 67.8% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 45.0 | 4.24e-01 | 96.8% | 80.3% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.76e-01 | 90.3% | 36.5% |
| 3pfiA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 45.0 | 4.26e-01 | 96.8% | 80.8% |
| 3l2pA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.52 | 41.0 | 3.06e-01 | 95.2% | 49.0% |
| 7u37A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 4.23e-01 | 88.7% | 100.0% |
| 4tv7D01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 44.0 | 3.93e-01 | 96.8% | 71.8% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.74 | 59.0 | 5.66e-01 | 96.8% | 75.4% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.72 | 54.0 | 5.98e-01 | 90.3% | 100.0% |
| 5004272 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.68 | 39.0 | 4.19e-01 | 82.3% | 63.6% |
| 3963287 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 36.0 | 4.43e-01 | 93.5% | 95.0% |
| 3306283 | 101.15.1.8 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP | 0.58 | 38.0 | 3.81e-01 | 93.5% | 64.6% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.58 | 37.0 | 4.25e-01 | 91.9% | 91.1% |
| 3413357 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.57 | 38.0 | 3.70e-01 | 90.3% | 61.4% |
| 3331840 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.57 | 37.0 | 3.94e-01 | 91.9% | 76.4% |
| 3739278 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.56 | 47.0 | 4.78e-01 | 98.4% | 96.7% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.55 | 37.0 | 4.05e-01 | 88.7% | 86.3% |
| 4945999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 4.13e-01 | 93.5% | 81.2% |
| 3608297 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.54 | 33.0 | 3.77e-01 | 75.8% | 84.4% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.54 | 38.0 | 2.94e-01 | 74.2% | 40.7% |
| 3598519 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 31.0 | 3.56e-01 | 77.4% | 82.2% |
| 5029829 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 44.0 | 4.03e-01 | 98.4% | 74.7% |
| 3636424 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.51 | 38.0 | 4.06e-01 | 80.6% | 92.7% |
| 4968989 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.90e-01 | 96.8% | 72.9% |
D4
high
residues 279-343
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.68 | 42.0 | 4.75e-01 | 86.2% | 88.9% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 32.0 | 3.28e-01 | 89.2% | 50.0% |
| 6phxA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 40.0 | 3.51e-01 | 93.8% | 47.4% |
| 5dkaA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 37.0 | 3.26e-01 | 86.2% | 42.7% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 33.0 | 3.60e-01 | 89.2% | 65.4% |
| 3vhtB02 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 32.0 | 3.89e-01 | 81.5% | 100.0% |
| 7kw8A01 | 1.10.10.970 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain | 0.57 | 42.0 | 4.09e-01 | 80.0% | 90.4% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 4.00e-01 | 78.5% | 78.7% |
| 2nooA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 39.0 | 2.60e-01 | 75.4% | 47.8% |
| 2fk5A00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.54 | 45.0 | 3.23e-01 | 93.8% | 40.5% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.38e-01 | 89.2% | 70.9% |
| 1a0iA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 40.0 | 3.75e-01 | 84.6% | 83.1% |
| 4o5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.69e-01 | 78.5% | 71.8% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.47e-01 | 80.0% | 62.5% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.46e-01 | 80.0% | 66.3% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 39.0 | 3.34e-01 | 95.4% | 69.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3058113 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.77 | 55.0 | 6.11e-01 | 90.8% | 94.2% |
| 4988977 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 45.0 | 5.29e-01 | 89.2% | 95.3% |
| 3886999 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.71 | 44.0 | 5.19e-01 | 89.2% | 100.0% |
| 3562527 | 386.1.1.358 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 | 0.69 | 39.0 | 4.10e-01 | 84.6% | 60.0% |
| 3586230 | 386.1.1.350 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29157 | 0.63 | 46.0 | 2.87e-01 | 86.2% | 14.8% |
| 3617484 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 37.0 | 3.94e-01 | 84.6% | 67.3% |
| 3213903 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 37.0 | 3.27e-01 | 86.2% | 40.0% |
| 3208496 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 42.0 | 3.76e-01 | 78.5% | 98.0% |
| 3977310 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 40.0 | 3.33e-01 | 75.4% | 52.5% |
| 3773803 | 386.1.1.358 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 | 0.56 | 42.0 | 3.50e-01 | 81.5% | 72.5% |
| 3680494 | 887.1.1.1 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 | 0.54 | 44.0 | 3.16e-01 | 100.0% | 27.2% |
| 3659638 | 887.1.1.2 ↗ | a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30,Ribosomal_L30_N | 0.54 | 44.0 | 3.15e-01 | 100.0% | 27.2% |
| 3820603 | 375.1.1.18 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › SIR2 | 0.53 | 36.0 | 3.09e-01 | 72.3% | 86.1% |
| 3941508 | 148.1.3.57 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5375 | 0.53 | 43.0 | 3.85e-01 | 92.3% | 96.8% |
| 5010061 | 101.1.2.87 ↗ | alpha arrays › HTH › HTH › winged helix domain › PaaX | 0.52 | 37.0 | 3.57e-01 | 78.5% | 72.5% |
| 4131551 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 42.0 | 2.50e-01 | 93.8% | 35.8% |
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 36.0 | 3.61e-01 | 73.8% | 75.0% |
| 4942782 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.51 | 37.0 | 3.58e-01 | 80.0% | 73.4% |
| 1681129 | 3975.1.1.1 ↗ | a+b two layers › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › uncharacterized protein lpg1496 N-terminal domain › lpg1496_N | 0.51 | 36.0 | 2.91e-01 | 76.9% | 42.2% |