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MK554696.1__QBJ04179.1__X__00055

Bact-Vir

MK554696.1__QBJ04179.1__X__00055

Identity

Accession:
MK554696 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latrobevirus› Fusobacterium_phage_Fnu1

TaxID: 2530024

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-105
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.82 70.0 5.86e-01 97.1% 56.8%
2h00B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.79 70.0 4.86e-01 97.1% 34.3%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.78 66.0 6.61e-01 95.6% 91.2%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.77 63.0 6.11e-01 95.6% 80.0%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 66.0 4.96e-01 97.1% 42.2%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.74 50.0 4.75e-01 70.6% 60.5%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.74 60.0 5.75e-01 95.6% 76.9%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.72 56.0 5.60e-01 88.2% 82.9%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.72 62.0 6.25e-01 100.0% 100.0%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 49.0 3.87e-01 72.1% 77.7%
3gkuA03 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.71 60.0 5.98e-01 100.0% 93.0%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 60.0 4.56e-01 95.6% 41.2%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.67 53.0 4.72e-01 83.8% 63.4%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.67 58.0 5.39e-01 100.0% 92.0%
2f06A00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.67 48.0 3.73e-01 75.0% 79.9%
8c9vA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 55.0 4.05e-01 91.2% 50.3%
3mtjA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 43.0 4.23e-01 70.6% 63.2%
2qmwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 49.0 4.53e-01 86.8% 66.7%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.64 48.0 4.77e-01 98.5% 77.8%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 55.0 3.97e-01 97.1% 73.3%
2vs7A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 50.0 4.80e-01 91.2% 75.6%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 50.0 4.73e-01 100.0% 73.8%
4liqE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 4.45e-01 100.0% 70.5%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.13e-01 80.9% 63.7%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.65e-01 86.8% 44.8%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.61 52.0 3.90e-01 95.6% 49.1%
1ejcA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.60 51.0 3.67e-01 95.6% 47.1%
1dd5A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.60 47.0 4.61e-01 100.0% 77.3%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.60 46.0 4.26e-01 82.4% 64.7%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.58 41.0 3.78e-01 75.0% 58.1%
1tg7A02 2.102.20.10 Mainly Beta › 3-layer Sandwich › beta-galactosidase, domain 2 › Beta-galactosidase, domain 2 0.58 51.0 3.75e-01 98.5% 38.1%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 49.0 3.90e-01 100.0% 86.8%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 44.0 3.49e-01 83.8% 43.8%
1yk3B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 49.0 3.63e-01 100.0% 72.0%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.23e-01 94.1% 68.2%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.57 45.0 4.51e-01 91.2% 83.1%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.56 48.0 4.25e-01 100.0% 73.6%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 39.0 3.57e-01 86.8% 54.3%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.86e-01 83.8% 63.2%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 4.26e-01 91.2% 85.4%
2amyA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.55 47.0 4.12e-01 94.1% 76.5%
2jllA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.18e-01 100.0% 67.4%
2mobA00 3.90.56.10 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM 0.55 44.0 4.00e-01 89.7% 89.4%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.56e-01 97.1% 85.1%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 4.26e-01 91.2% 85.3%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.59e-01 100.0% 40.7%
2vzyC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.39e-01 95.6% 78.3%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.68e-01 76.5% 69.0%
2wv3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.09e-01 95.6% 65.0%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.54 45.0 4.13e-01 100.0% 91.6%
7r9xA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 3.23e-01 88.2% 39.9%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.56e-01 83.8% 56.3%
1s48A04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 43.0 3.68e-01 91.2% 59.5%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 41.0 3.72e-01 92.6% 83.2%
5cemA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.97e-01 85.3% 78.1%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.19e-01 89.7% 80.7%
4hvmB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 41.0 3.08e-01 91.2% 46.3%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 38.0 3.52e-01 88.2% 61.1%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.93e-01 100.0% 88.2%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.51 40.0 3.98e-01 94.1% 84.7%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.50 44.0 3.55e-01 98.5% 61.2%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036372 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.81 67.0 6.86e-01 95.6% 93.8%
5053899 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.80 68.0 6.76e-01 97.1% 88.6%
None — 0.80 72.0 4.78e-01 100.0% 36.5%
4945662 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.80 64.0 6.57e-01 89.7% 90.8%
4963386 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.79 64.0 6.54e-01 89.7% 90.8%
4341023 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.79 63.0 6.43e-01 89.7% 90.8%
4930705 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.77 65.0 6.65e-01 95.6% 96.9%
4583415 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.75 63.0 6.16e-01 94.1% 84.0%
4955649 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.75 62.0 5.89e-01 97.1% 77.5%
3706636 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 61.0 5.82e-01 92.6% 76.2%
4357374 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.74 60.0 6.12e-01 89.7% 92.3%
3743748 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.54e-01 91.2% 67.8%
3236950 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 61.0 6.09e-01 98.5% 91.4%
5016099 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 48.0 4.92e-01 72.1% 70.8%
5055166 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.72 60.0 5.95e-01 95.6% 88.6%
4930880 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.72 58.0 5.75e-01 91.2% 85.7%
3478525 320.1.1.7 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.71 59.0 5.77e-01 91.2% 82.7%
5042991 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.71 47.0 4.61e-01 72.1% 62.7%
3740540 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.70 61.0 5.82e-01 97.1% 82.5%
3992039 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.70 61.0 5.54e-01 100.0% 74.5%
3305323 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 48.0 4.70e-01 73.5% 69.3%
3624413 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 57.0 5.79e-01 94.1% 95.4%
5032337 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.68 54.0 5.13e-01 91.2% 72.5%
5022360 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.68 60.0 4.30e-01 100.0% 98.5%
4983991 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.68 57.0 4.32e-01 95.6% 45.0%
3648162 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.67 57.0 3.50e-01 94.1% 42.2%
3498295 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.67 54.0 3.00e-01 88.2% 12.2%
3367924 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 47.0 3.92e-01 75.0% 47.5%
3810458 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 49.0 4.46e-01 89.7% 60.0%
4963299 304.24.1.43 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PF25930 0.64 53.0 4.30e-01 100.0% 48.8%
4975645 304.60.1.2 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › Ribosomal_L10 0.64 55.0 4.48e-01 100.0% 85.9%
3666577 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 49.0 4.38e-01 91.2% 58.6%
3784067 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 54.0 4.59e-01 100.0% 59.2%
5030782 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 51.0 4.56e-01 88.2% 68.4%
3660837 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 48.0 4.52e-01 83.8% 67.1%
172962 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.61 55.0 4.72e-01 100.0% 76.4%
3369895 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.61 50.0 4.58e-01 97.1% 67.4%
3365684 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.61 49.0 4.38e-01 98.5% 62.0%
3840730 320.1.1.7 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.60 51.0 4.94e-01 100.0% 91.3%
3716821 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.60 48.0 4.74e-01 94.1% 90.7%
3611405 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.59 48.0 4.94e-01 94.1% 100.0%
4928347 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.56 46.0 3.54e-01 97.1% 100.0%
3879806 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.55 45.0 4.16e-01 91.2% 97.8%
3659062 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.54 37.0 3.73e-01 75.0% 70.0%
4996377 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.53 44.0 3.95e-01 95.6% 78.0%
4069329 304.162.1.1 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 38.0 3.69e-01 89.7% 67.5%