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MK554696.1__QBJ04190.1__X__00068
Bact-VirMK554696.1__QBJ04190.1__X__00068
Identity
- Accession:
- MK554696 ↗
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Taxonomy
TaxID: 2530024
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-98
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.72 | 52.0 | 4.68e-01 | 93.3% | 54.8% |
| 1vm8B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.66 | 56.0 | 3.58e-01 | 91.1% | 69.8% |
| 1r94A00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.66 | 36.0 | 3.51e-01 | 97.8% | 47.4% |
| 3fv6A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.66 | 48.0 | 4.14e-01 | 94.4% | 48.3% |
| 3kpbA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.65 | 45.0 | 4.10e-01 | 93.3% | 53.8% |
| 3i8nB00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.65 | 44.0 | 3.97e-01 | 95.6% | 50.0% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.65 | 47.0 | 4.02e-01 | 94.4% | 47.9% |
| 2rihA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.64 | 46.0 | 4.08e-01 | 94.4% | 51.9% |
| 3ocoA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.64 | 45.0 | 3.94e-01 | 97.8% | 48.5% |
| 3lv9A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.63 | 44.0 | 3.88e-01 | 96.7% | 49.2% |
| 3hf7A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.63 | 45.0 | 4.04e-01 | 96.7% | 52.8% |
| 1vpaA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.62 | 52.0 | 3.87e-01 | 91.1% | 88.7% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.62 | 39.0 | 3.90e-01 | 97.8% | 61.7% |
| 4dqwA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.60 | 43.0 | 4.03e-01 | 94.4% | 60.2% |
| 3gueB01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 51.0 | 3.45e-01 | 96.7% | 77.9% |
| 1zfjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 41.0 | 2.65e-01 | 93.3% | 14.5% |
| 6aikB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.55 | 39.0 | 2.75e-01 | 94.4% | 21.8% |
| 2x5nA01 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.55 | 42.0 | 3.36e-01 | 81.1% | 43.0% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.55 | 39.0 | 3.04e-01 | 74.4% | 35.7% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.53 | 40.0 | 3.70e-01 | 97.8% | 61.3% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 44.0 | 3.57e-01 | 93.3% | 48.3% |
| 4lqeA00 | 3.40.1350.140 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › MepB-like | 0.52 | 45.0 | 3.83e-01 | 95.6% | 67.1% |
| 4qjiB00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.52 | 33.0 | 2.59e-01 | 93.3% | 27.3% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 32.0 | 3.22e-01 | 84.4% | 57.9% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 36.0 | 2.73e-01 | 100.0% | 29.5% |
| 2qx2A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 41.0 | 2.89e-01 | 90.0% | 44.0% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.51 | 44.0 | 3.44e-01 | 93.3% | 91.4% |
| 2iueA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 43.0 | 3.30e-01 | 94.4% | 65.1% |
| 6xwlE02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 42.0 | 3.75e-01 | 94.4% | 63.5% |
| 2qb7B02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.51 | 42.0 | 3.69e-01 | 97.8% | 59.3% |
| 1th0B00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.51 | 40.0 | 3.06e-01 | 98.9% | 35.0% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.50 | 42.0 | 3.59e-01 | 94.4% | 72.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.77 | 54.0 | 3.62e-01 | 73.3% | 20.0% |
| 5078555 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.69 | 52.0 | 4.54e-01 | 94.4% | 53.3% |
| 3602310 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.66 | 46.0 | 4.09e-01 | 94.4% | 50.0% |
| 3212054 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.65 | 51.0 | 4.01e-01 | 96.7% | 40.5% |
| 3603113 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.65 | 47.0 | 4.03e-01 | 94.4% | 47.6% |
| 3415655 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 46.0 | 3.22e-01 | 87.8% | 69.1% |
| 3253715 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.56 | 47.0 | 3.83e-01 | 94.4% | 54.9% |
| 5057825 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.56 | 38.0 | 4.14e-01 | 95.6% | 84.0% |
| 5073360 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 39.0 | 4.36e-01 | 96.7% | 92.9% |
| 4950695 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.55 | 39.0 | 4.28e-01 | 94.4% | 89.3% |
| 3839971 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 3.48e-01 | 92.2% | 39.5% |
| 5001624 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 39.0 | 4.22e-01 | 95.6% | 89.3% |
| 5065830 | 328.3.1.0 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain | 0.54 | 38.0 | 4.27e-01 | 94.4% | 94.3% |
| 3837944 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 45.0 | 4.14e-01 | 91.1% | 80.9% |
| 5010461 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.53 | 38.0 | 4.16e-01 | 96.7% | 89.3% |
| 5014287 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.53 | 34.0 | 3.41e-01 | 96.7% | 63.3% |
| 4981134 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.53 | 37.0 | 4.20e-01 | 96.7% | 94.3% |
| 4991987 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.52 | 45.0 | 3.58e-01 | 94.4% | 98.9% |
| 4242672 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 37.0 | 2.86e-01 | 73.3% | 38.5% |
| 4955649 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.52 | 37.0 | 3.98e-01 | 96.7% | 83.7% |
| 4968479 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.52 | 37.0 | 2.91e-01 | 93.3% | 33.2% |
| 3521006 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.52 | 37.0 | 2.89e-01 | 76.7% | 44.8% |
| 4936788 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.51 | 37.0 | 4.06e-01 | 96.7% | 90.7% |
| 3279780 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.51 | 43.0 | 3.28e-01 | 91.1% | 41.4% |
| 4956492 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 44.0 | 3.52e-01 | 95.6% | 98.9% |
| 5079388 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.50 | 44.0 | 3.47e-01 | 97.8% | 99.5% |