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MK554696.1__QBJ04206.1__X__00065

Bact-Vir

MK554696.1__QBJ04206.1__X__00065

Identity

Accession:
MK554696 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Latrobevirus› Fusobacterium_phage_Fnu1

TaxID: 2530024

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 52.0 4.18e-01 76.0% 98.6%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 51.0 4.09e-01 76.0% 98.7%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.72 53.0 3.22e-01 78.7% 17.0%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 52.0 4.25e-01 78.7% 73.8%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 51.0 4.24e-01 77.3% 97.0%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 51.0 4.12e-01 77.3% 88.0%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 49.0 4.16e-01 77.3% 94.4%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 49.0 3.12e-01 78.7% 18.0%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 47.0 4.29e-01 77.3% 98.0%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.62 50.0 4.02e-01 97.3% 43.6%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 47.0 3.97e-01 92.0% 49.6%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 3.82e-01 85.3% 53.6%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.61 46.0 4.23e-01 81.3% 78.8%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.61 44.0 3.47e-01 77.3% 100.0%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 45.0 4.31e-01 100.0% 69.3%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 41.0 3.31e-01 72.0% 82.3%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.59 43.0 3.84e-01 78.7% 87.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 42.0 2.82e-01 77.3% 37.1%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 51.0 4.66e-01 100.0% 91.3%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 46.0 4.13e-01 89.3% 89.0%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 40.0 2.75e-01 72.0% 78.2%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.57 41.0 4.18e-01 77.3% 93.0%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 44.0 3.94e-01 90.7% 58.6%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 40.0 2.69e-01 77.3% 28.0%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 40.0 3.87e-01 77.3% 97.7%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 3.82e-01 94.7% 67.4%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 43.0 3.60e-01 89.3% 51.7%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.79e-01 92.0% 54.8%
2o4vA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.54 38.0 2.41e-01 74.7% 54.7%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.27e-01 100.0% 71.5%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.53 38.0 3.24e-01 78.7% 67.4%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 44.0 3.83e-01 98.7% 100.0%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.68e-01 85.3% 97.2%
1n7vA01 2.105.10.10 Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller 0.53 41.0 3.23e-01 88.0% 70.1%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 45.0 3.48e-01 100.0% 52.2%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.65e-01 94.7% 70.1%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 43.0 2.96e-01 94.7% 30.7%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.52e-01 77.3% 33.7%
4aefA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.60e-01 84.0% 96.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 43.0 3.10e-01 100.0% 33.6%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3633770 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 53.0 3.19e-01 78.7% 18.3%
4019945 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.68 50.0 3.14e-01 77.3% 22.1%
3377988 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 48.0 4.42e-01 77.3% 76.0%
3825682 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.66 48.0 4.42e-01 77.3% 78.8%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.65 37.0 4.23e-01 72.0% 76.4%
3940101 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 47.0 4.04e-01 77.3% 60.8%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 47.0 4.47e-01 78.7% 70.0%
4977517 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 45.0 4.58e-01 74.7% 80.0%
3741046 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.63 40.0 2.56e-01 77.3% 12.4%
3248607 206.1.2.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K 0.63 45.0 2.95e-01 74.7% 51.1%
4968686 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.63 47.0 4.27e-01 78.7% 85.0%
3625247 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 47.0 4.15e-01 80.0% 55.5%
3862116 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.62 46.0 3.53e-01 96.0% 35.2%
3974189 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 54.0 4.61e-01 98.7% 80.8%
3824156 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.62 49.0 4.97e-01 89.3% 93.3%
3619712 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.62 44.0 2.69e-01 76.0% 17.7%
3616618 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 3.00e-01 82.7% 32.8%
3434352 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 45.0 3.06e-01 78.7% 30.7%
3729350 5.1.4.411 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 0.62 45.0 2.84e-01 77.3% 18.1%
4228206 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.61 54.0 5.29e-01 100.0% 100.0%
3744143 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.61 44.0 3.60e-01 77.3% 52.0%
3584223 5.1.5.64 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 0.61 45.0 2.77e-01 78.7% 14.8%
3800961 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.76e-01 78.7% 15.2%
3467472 5.1.5.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.61 40.0 2.69e-01 78.7% 16.7%
3705816 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.61 44.0 3.13e-01 76.0% 43.7%
3905680 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 40.0 2.58e-01 90.7% 13.3%
3251221 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.60 54.0 3.91e-01 100.0% 92.9%
3729086 5.1.3.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.60 46.0 2.89e-01 82.7% 17.2%
3647885 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 43.0 2.87e-01 77.3% 18.7%
4504902 3222.1.1.1 ↗ a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory 0.60 43.0 2.92e-01 78.7% 34.9%
3269464 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 42.0 3.78e-01 76.0% 62.7%
5075100 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 46.0 4.26e-01 94.7% 66.0%
3548957 5.1.4.241 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › eIF2A 0.59 43.0 2.69e-01 78.7% 14.8%
3430637 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 42.0 2.82e-01 77.3% 19.0%
3805475 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 43.0 2.80e-01 77.3% 25.5%
4662134 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 51.0 4.49e-01 100.0% 86.1%
3450584 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 43.0 2.82e-01 78.7% 41.3%
3966051 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 50.0 4.21e-01 100.0% 75.6%
4992522 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.58 44.0 4.41e-01 94.7% 79.5%
3697498 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.58 44.0 3.33e-01 100.0% 33.5%
5074323 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.57 46.0 4.04e-01 89.3% 63.5%
3688114 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.57 41.0 2.54e-01 77.3% 17.6%
None — 0.57 43.0 2.71e-01 80.0% 39.8%
3581062 59.1.1.5 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.57 42.0 3.80e-01 78.7% 90.5%
2665337 3264.1.1.0 ↗ 0.57 44.0 3.50e-01 89.3% 39.8%
5078972 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 43.0 4.25e-01 97.3% 77.6%
1003933 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.56 44.0 3.94e-01 90.7% 58.6%
3632777 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 46.0 3.45e-01 96.0% 46.7%
3214663 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 43.0 3.74e-01 94.7% 52.3%
3648313 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 40.0 2.73e-01 80.0% 21.0%
3682839 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.55 40.0 2.69e-01 78.7% 20.6%
3445792 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 2.79e-01 93.3% 17.4%
3687869 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 44.0 3.64e-01 94.7% 56.0%
3933016 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 40.0 2.72e-01 80.0% 33.2%
3808257 331.4.1.33 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CCB1 0.54 44.0 4.35e-01 98.7% 85.9%
3749643 59.1.1.5 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.54 38.0 3.29e-01 76.0% 72.0%
5052821 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 3.96e-01 92.0% 98.1%
3892124 10.1.1.9 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY 0.53 45.0 3.47e-01 100.0% 87.7%
4930969 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 41.0 4.13e-01 96.0% 82.7%
3643793 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 44.0 2.79e-01 93.3% 17.7%
3724602 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.52 38.0 2.51e-01 80.0% 24.4%
3445416 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 37.0 2.46e-01 77.3% 18.3%
3884681 292.2.1.10 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N 0.52 33.0 3.10e-01 72.0% 51.6%
4948381 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.52 41.0 3.97e-01 100.0% 77.8%
4666231 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.52 44.0 3.39e-01 94.7% 76.0%
4951147 881.4.1.0 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB 0.51 38.0 3.35e-01 100.0% 51.7%
3260117 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.51 44.0 2.91e-01 100.0% 24.2%
4768813 331.10.1.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.51 43.0 3.22e-01 100.0% 39.2%
4961327 3264.1.1.0 ↗ 0.51 40.0 3.21e-01 94.7% 41.9%
3822070 331.10.2.8 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SAM_decarbox 0.50 43.0 3.81e-01 100.0% 73.0%
4976589 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 39.0 3.73e-01 97.3% 72.6%