←Back to structures
MK560763.1__QBP06974.1__X__00041
Bact-VirMK560763.1__QBP06974.1__X__00041
Identity
- Accession:
- MK560763 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-112
Domain cluster:
rep: SRR1747045_scaffold_1_prodigal-single.1__X__X__00179__D38-164
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00239.27 best | Resolvase | 107.9 | 6.90e-31 | 99.1% | 71.9% |
D2
medium
residues 146-262
Domain cluster:
rep: OR521081.1__WNO27914.1__SEA_HALO3_46__00046__D16-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07508.20 best | Recombinase | 70.3 | 2.00e-19 | 75.2% | 100.0% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6dnwA01 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.88 | 81.0 | 7.99e-01 | 100.0% | 91.9% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.85 | 80.0 | 6.66e-01 | 100.0% | 86.3% |
| 1yg2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 33.0 | 3.91e-01 | 74.4% | 72.2% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 36.0 | 4.16e-01 | 95.7% | 75.9% |
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 4.23e-01 | 88.9% | 81.7% |
| 4yiiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 36.0 | 4.45e-01 | 88.9% | 93.1% |
| 3kfwX01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 31.0 | 3.76e-01 | 76.1% | 76.0% |
| 3eqvA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 40.0 | 3.53e-01 | 71.8% | 89.5% |
| 6hxpA01 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.55 | 31.0 | 3.35e-01 | 85.5% | 62.6% |
| 5cqgA03 | 1.10.10.2210 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 33.0 | 3.92e-01 | 86.3% | 91.1% |
| 1w5sA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.70e-01 | 88.0% | 73.8% |
| 3awmA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 47.0 | 3.34e-01 | 100.0% | 82.3% |
| 2ia2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 29.0 | 3.65e-01 | 72.6% | 92.6% |
| 3dh1B00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 40.0 | 3.64e-01 | 84.6% | 97.5% |
| 2jroA01 | 3.30.1910.10 | Alpha Beta › 2-Layer Sandwich › so0334 like fold › so0334 like domain | 0.51 | 29.0 | 3.69e-01 | 89.7% | 100.0% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.50 | 34.0 | 3.18e-01 | 70.1% | 93.5% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032641 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.94 | 84.0 | 8.71e-01 | 94.9% | 99.1% |
| 4939690 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.93 | 77.0 | 8.28e-01 | 97.4% | 100.0% |
| 3282557 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.92 | 87.0 | 7.25e-01 | 98.3% | 92.4% |
| 4115814 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.92 | 88.0 | 7.76e-01 | 100.0% | 87.5% |
| 4932316 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.92 | 76.0 | 8.23e-01 | 96.6% | 100.0% |
| 4072866 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.92 | 86.0 | 7.90e-01 | 98.3% | 100.0% |
| 3987818 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.91 | 83.0 | 8.37e-01 | 94.0% | 100.0% |
| 4969809 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.91 | 77.0 | 7.97e-01 | 90.6% | 93.6% |
| 3590291 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.90 | 86.0 | 7.77e-01 | 100.0% | 92.0% |
| 5030856 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.90 | 83.0 | 8.13e-01 | 96.6% | 92.8% |
| 3962001 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.89 | 84.0 | 7.88e-01 | 100.0% | 92.1% |
| 4007589 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.88 | 81.0 | 7.89e-01 | 96.6% | 98.4% |
| 1145762 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.88 | 81.0 | 7.77e-01 | 100.0% | 86.9% |
| 5038787 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.87 | 75.0 | 7.80e-01 | 94.0% | 96.4% |
| 1062575 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.85 | 80.0 | 6.65e-01 | 100.0% | 85.9% |
| 3956288 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.85 | 79.0 | 7.54e-01 | 100.0% | 91.9% |
| 3588264 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 63.0 | 7.10e-01 | 94.0% | 100.0% |
| 4998605 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.82 | 73.0 | 7.52e-01 | 93.2% | 98.2% |
| 5013811 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 36.0 | 5.13e-01 | 71.8% | 98.2% |
| 4008778 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 37.0 | 5.13e-01 | 88.9% | 100.0% |
| 3590551 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.73 | 33.0 | 4.83e-01 | 85.5% | 100.0% |
| 3983493 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.72 | 33.0 | 4.76e-01 | 82.9% | 100.0% |
| 3981939 | 101.1.1.202 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 | 0.71 | 35.0 | 4.88e-01 | 87.2% | 100.0% |
| 3603105 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 36.0 | 4.40e-01 | 87.2% | 76.0% |
| 4927588 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 40.0 | 4.88e-01 | 78.6% | 88.0% |
| 3504540 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.70 | 34.0 | 4.79e-01 | 89.7% | 100.0% |
| 3602903 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.70 | 36.0 | 4.74e-01 | 75.2% | 90.8% |
| 3380070 | 101.43.1.3 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › PF26175 | 0.69 | 34.0 | 4.69e-01 | 85.5% | 93.3% |
| 4236554 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.66 | 35.0 | 4.72e-01 | 90.6% | 100.0% |
| 3812799 | 101.1.1.291 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26175 | 0.66 | 36.0 | 4.70e-01 | 84.6% | 95.4% |
| 3905735 | 101.1.2.94 ↗ | alpha arrays › HTH › HTH › winged helix domain › ANAPC2 | 0.64 | 39.0 | 4.50e-01 | 92.3% | 84.7% |
| 3979431 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.63 | 37.0 | 3.37e-01 | 89.7% | 44.7% |
| 5022256 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 36.0 | 4.07e-01 | 88.0% | 74.4% |
| 3584520 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 40.0 | 4.12e-01 | 87.2% | 70.0% |
| 3339443 | 101.1.2.94 ↗ | alpha arrays › HTH › HTH › winged helix domain › ANAPC2 | 0.60 | 39.0 | 4.30e-01 | 94.0% | 82.1% |
| 3841412 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.57 | 39.0 | 4.00e-01 | 96.6% | 71.3% |
| 3443929 | 101.1.2.67 ↗ | alpha arrays › HTH › HTH › winged helix domain › HARE-HTH | 0.57 | 37.0 | 3.48e-01 | 81.2% | 52.9% |
| 3414582 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.56 | 43.0 | 2.78e-01 | 100.0% | 16.9% |
| 3600221 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.02e-01 | 94.0% | 41.8% |
| 3899864 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 3.74e-01 | 92.3% | 75.2% |
| 3483524 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.54 | 47.0 | 3.55e-01 | 100.0% | 67.2% |
| 4845603 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.53 | 28.0 | 3.13e-01 | 97.4% | 64.8% |
| 3290651 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 4.07e-01 | 90.6% | 76.9% |
| 3759099 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.52 | 42.0 | 3.19e-01 | 90.6% | 93.8% |
| 5050809 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 2.99e-01 | 88.9% | 28.0% |
| 3630469 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.50 | 43.0 | 3.23e-01 | 97.4% | 66.5% |
D3
medium
residues 365-419
Domain cluster:
representative
CATH (72)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 1.00 | 89.0 | 6.68e-01 | 92.7% | 44.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.97 | 71.0 | 6.78e-01 | 80.0% | 67.7% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.96 | 91.0 | 8.79e-01 | 100.0% | 91.7% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.91 | 78.0 | 5.78e-01 | 100.0% | 39.5% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.90 | 83.0 | 4.63e-01 | 100.0% | 9.3% |
| 5mdtA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.90 | 63.0 | 4.41e-01 | 76.4% | 26.3% |
| 2cazE00 | 1.20.1440.200 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Vps28 N-terminal domain | 0.90 | 82.0 | 6.51e-01 | 100.0% | 53.5% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 78.0 | 6.41e-01 | 100.0% | 55.2% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.89 | 72.0 | 6.32e-01 | 87.3% | 62.8% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.87 | 77.0 | 6.27e-01 | 100.0% | 54.1% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.87 | 68.0 | 7.11e-01 | 96.4% | 93.9% |
| 3syvA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.87 | 73.0 | 4.66e-01 | 100.0% | 20.8% |
| 2yn7A00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.86 | 77.0 | 5.08e-01 | 100.0% | 25.7% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.86 | 77.0 | 7.33e-01 | 100.0% | 85.9% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.85 | 72.0 | 6.25e-01 | 92.7% | 67.5% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.85 | 74.0 | 6.41e-01 | 100.0% | 63.5% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.85 | 76.0 | 6.45e-01 | 100.0% | 89.8% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.85 | 54.0 | 6.46e-01 | 72.7% | 100.0% |
| 6tkvA01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.85 | 70.0 | 6.54e-01 | 100.0% | 73.5% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.84 | 67.0 | 6.36e-01 | 85.5% | 100.0% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.84 | 72.0 | 4.72e-01 | 100.0% | 23.9% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.84 | 65.0 | 4.33e-01 | 96.4% | 23.7% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.83 | 74.0 | 5.84e-01 | 98.2% | 79.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 73.0 | 7.21e-01 | 98.2% | 98.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.83 | 74.0 | 7.04e-01 | 100.0% | 92.2% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.82 | 69.0 | 5.14e-01 | 100.0% | 38.3% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 70.0 | 6.59e-01 | 98.2% | 78.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.81 | 69.0 | 6.25e-01 | 94.5% | 74.3% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.81 | 67.0 | 5.86e-01 | 100.0% | 61.0% |
| 2itbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.81 | 73.0 | 4.87e-01 | 100.0% | 28.3% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.81 | 65.0 | 5.94e-01 | 94.5% | 67.6% |
| 2g2dA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.81 | 71.0 | 4.99e-01 | 96.4% | 78.1% |
| 2lmgA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.80 | 65.0 | 5.94e-01 | 94.5% | 67.6% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.80 | 64.0 | 4.45e-01 | 87.3% | 41.0% |
| 1dd5A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.79 | 70.0 | 5.56e-01 | 98.2% | 79.8% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.79 | 67.0 | 4.66e-01 | 100.0% | 29.4% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.79 | 69.0 | 6.70e-01 | 100.0% | 90.2% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.78 | 69.0 | 5.35e-01 | 98.2% | 79.5% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.78 | 68.0 | 5.01e-01 | 100.0% | 38.4% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.78 | 66.0 | 5.16e-01 | 92.7% | 60.2% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 65.0 | 6.44e-01 | 94.5% | 93.2% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 68.0 | 6.32e-01 | 100.0% | 88.7% |
| 3dytA02 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.77 | 67.0 | 4.63e-01 | 100.0% | 28.9% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 65.0 | 5.86e-01 | 100.0% | 67.9% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.77 | 59.0 | 6.13e-01 | 81.8% | 90.0% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.77 | 65.0 | 4.03e-01 | 100.0% | 17.7% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 65.0 | 5.30e-01 | 100.0% | 50.0% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 67.0 | 6.52e-01 | 100.0% | 95.1% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.76 | 50.0 | 4.86e-01 | 74.5% | 60.3% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 64.0 | 6.26e-01 | 100.0% | 90.0% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.76 | 66.0 | 6.52e-01 | 98.2% | 93.1% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.76 | 54.0 | 5.49e-01 | 76.4% | 98.1% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 65.0 | 5.25e-01 | 100.0% | 50.9% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.75 | 63.0 | 5.69e-01 | 100.0% | 69.1% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.74 | 65.0 | 5.26e-01 | 100.0% | 55.2% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 54.0 | 4.83e-01 | 85.5% | 55.7% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 5.10e-01 | 100.0% | 53.9% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.73 | 60.0 | 5.48e-01 | 100.0% | 68.4% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 4.81e-01 | 100.0% | 45.1% |
| 2jaeA03 | 1.20.1440.240 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.72 | 64.0 | 5.24e-01 | 100.0% | 70.3% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 61.0 | 4.66e-01 | 100.0% | 41.4% |
| 4toiA02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.71 | 50.0 | 5.33e-01 | 74.5% | 95.8% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.70 | 60.0 | 4.69e-01 | 100.0% | 73.6% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 52.0 | 4.87e-01 | 87.3% | 65.2% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 63.0 | 4.54e-01 | 100.0% | 38.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 56.0 | 4.79e-01 | 100.0% | 55.8% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.68 | 59.0 | 4.41e-01 | 100.0% | 95.8% |
| 4finB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 59.0 | 3.75e-01 | 100.0% | 39.3% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 56.0 | 5.24e-01 | 100.0% | 75.3% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 54.0 | 4.75e-01 | 100.0% | 59.8% |
| 4dnnA00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 50.0 | 5.13e-01 | 100.0% | 100.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 45.0 | 4.21e-01 | 90.9% | 98.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967342 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 1.00 | 95.0 | 7.87e-01 | 98.2% | 63.5% |
| 5065070 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 1.00 | 86.0 | 7.99e-01 | 89.1% | 75.4% |
| 4947371 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 1.00 | 96.0 | 7.10e-01 | 100.0% | 45.8% |
| 3435612 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 1.00 | 96.0 | 6.47e-01 | 100.0% | 33.3% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.99 | 94.0 | 7.82e-01 | 98.2% | 63.5% |
| 5051746 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.99 | 92.0 | 7.84e-01 | 96.4% | 66.3% |
| 5067407 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.99 | 95.0 | 7.23e-01 | 100.0% | 50.0% |
| 4996292 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.99 | 95.0 | 7.46e-01 | 100.0% | 55.0% |
| 5036455 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.99 | 85.0 | 5.10e-01 | 94.5% | 16.9% |
| 4971500 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.98 | 94.0 | 6.97e-01 | 100.0% | 45.8% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.98 | 94.0 | 6.98e-01 | 100.0% | 46.2% |
| 3608528 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.98 | 93.0 | 6.41e-01 | 100.0% | 35.5% |
| 5043437 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.98 | 93.0 | 7.20e-01 | 100.0% | 52.4% |
| 3244203 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.97 | 92.0 | 6.30e-01 | 100.0% | 34.4% |
| 3374816 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.97 | 92.0 | 6.08e-01 | 100.0% | 29.7% |
| 3377698 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.96 | 86.0 | 6.59e-01 | 94.5% | 47.3% |
| 5074552 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.96 | 91.0 | 6.86e-01 | 100.0% | 47.8% |
| 3187917 | 192.15.1.3 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Vps23_core | 0.96 | 90.0 | 6.14e-01 | 100.0% | 33.3% |
| 5045248 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.96 | 91.0 | 7.60e-01 | 100.0% | 64.7% |
| 3997665 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.96 | 90.0 | 6.84e-01 | 100.0% | 48.7% |
| 4934678 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.96 | 90.0 | 6.02e-01 | 100.0% | 30.6% |
| 4947322 | 192.15.1.1 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › VPS28 | 0.95 | 90.0 | 6.80e-01 | 100.0% | 47.8% |
| 3438984 | 192.15.1.176 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Cornichon | 0.95 | 88.0 | 7.52e-01 | 100.0% | 66.3% |
| 4945691 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.94 | 80.0 | 6.93e-01 | 90.9% | 62.5% |
| 4008053 | 4168.1.1.7 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › PF26769 | 0.93 | 87.0 | 5.96e-01 | 100.0% | 33.9% |
| 5065508 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.92 | 85.0 | 6.82e-01 | 100.0% | 55.0% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.91 | 85.0 | 7.52e-01 | 100.0% | 73.3% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.90 | 82.0 | 5.22e-01 | 98.2% | 23.6% |
| 3725377 | 192.15.1.44 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF6604 | 0.90 | 83.0 | 6.93e-01 | 100.0% | 61.1% |
| 3410594 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.90 | 81.0 | 5.33e-01 | 100.0% | 26.3% |
| 3978264 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.89 | 77.0 | 5.46e-01 | 100.0% | 34.0% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.88 | 80.0 | 6.19e-01 | 100.0% | 50.4% |
| 5084060 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.88 | 79.0 | 5.62e-01 | 100.0% | 76.1% |
| 3780651 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.87 | 80.0 | 7.54e-01 | 100.0% | 84.6% |
| 4228031 | 109.4.1.128 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G_like_2 | 0.85 | 76.0 | 4.74e-01 | 100.0% | 20.1% |
| 3973636 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.85 | 76.0 | 6.84e-01 | 100.0% | 86.7% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.85 | 73.0 | 6.14e-01 | 100.0% | 57.8% |
| 4175809 | 5086.1.1.88 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_CyaD | 0.85 | 74.0 | 5.16e-01 | 96.4% | 100.0% |
| 4629385 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.84 | 75.0 | 5.42e-01 | 100.0% | 43.3% |
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.84 | 75.0 | 6.60e-01 | 100.0% | 68.8% |
| 3941960 | 5086.1.1.86 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG | 0.84 | 74.0 | 5.67e-01 | 100.0% | 52.0% |
| 3380124 | 109.4.1.1266 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm, ARM_PUB | 0.81 | 73.0 | 4.39e-01 | 100.0% | 15.3% |
| None | — | 0.78 | 66.0 | 5.13e-01 | 100.0% | 42.3% | |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.78 | 66.0 | 4.75e-01 | 92.7% | 35.6% |
| 3964486 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 65.0 | 4.74e-01 | 100.0% | 33.8% |
| 3491738 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.77 | 67.0 | 5.59e-01 | 100.0% | 81.8% |
| 3951780 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.77 | 68.0 | 4.01e-01 | 100.0% | 13.3% |
| 3473827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.77 | 64.0 | 6.28e-01 | 96.4% | 93.3% |
| 3720672 | 109.4.1.1591 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box | 0.73 | 66.0 | 4.12e-01 | 100.0% | 20.4% |
| 3973899 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.69 | 58.0 | 4.42e-01 | 100.0% | 100.0% |
| 3735933 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 59.0 | 4.40e-01 | 100.0% | 40.7% |
| 4873586 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.68 | 55.0 | 5.20e-01 | 100.0% | 75.7% |
| 3696717 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.68 | 59.0 | 4.09e-01 | 100.0% | 31.1% |
| 5070736 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 59.0 | 4.02e-01 | 100.0% | 56.0% |