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MK562503.1__QBP32903.1__HRP29_gp3__00003
Bact-VirMK562503.1__QBP32903.1__HRP29_gp3__00003
Identity
- Accession:
- MK562503 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Bucovirus›
Shigella_phage_Buco
TaxID: 2530183
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-132
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 32.0 | 3.89e-01 | 91.7% | 73.2% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.59 | 31.0 | 3.82e-01 | 83.5% | 80.3% |
| 1xu6A00 | 4.10.110.20 | Few Secondary Structures › Irregular › Spasmolytic Protein; domain 1 › Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain | 0.55 | 31.0 | 3.65e-01 | 83.5% | 80.0% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.55 | 39.0 | 4.18e-01 | 97.5% | 88.0% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 32.0 | 3.65e-01 | 90.9% | 76.3% |
| 4xrfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.32e-01 | 90.9% | 53.5% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 33.0 | 3.71e-01 | 88.4% | 82.1% |
| 5fb0A02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 31.0 | 3.26e-01 | 82.6% | 63.4% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 30.0 | 3.71e-01 | 79.3% | 97.2% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.51 | 35.0 | 3.32e-01 | 84.3% | 57.8% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.51e-01 | 80.2% | 74.8% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 38.0 | 4.01e-01 | 86.8% | 87.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060050 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.62 | 41.0 | 3.36e-01 | 88.4% | 35.2% |
| 3786229 | 5050.1.1.15 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like | 0.56 | 45.0 | 3.72e-01 | 86.8% | 82.8% |
| 4949658 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.55 | 34.0 | 4.04e-01 | 86.8% | 91.3% |
| 3690414 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.55 | 39.0 | 3.43e-01 | 74.4% | 80.5% |
| 3677437 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.55 | 37.0 | 3.79e-01 | 100.0% | 72.2% |
| 3832703 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.54 | 48.0 | 2.99e-01 | 98.3% | 21.3% |
| 3533529 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.53 | 43.0 | 3.37e-01 | 86.8% | 75.5% |
| 3280091 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.53 | 43.0 | 3.66e-01 | 86.0% | 75.0% |
| 3875394 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.53 | 43.0 | 3.38e-01 | 86.8% | 71.8% |
| 4021281 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.53 | 37.0 | 3.81e-01 | 80.2% | 74.2% |
| 4270827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.53 | 32.0 | 2.82e-01 | 98.3% | 40.0% |
| 4938202 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.52 | 38.0 | 4.07e-01 | 88.4% | 90.5% |
| 3428027 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.51 | 35.0 | 3.41e-01 | 70.2% | 79.3% |
| 3297063 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 3.56e-01 | 88.4% | 78.0% |
| 3634304 | 101.1.2.359 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD | 0.51 | 31.0 | 2.83e-01 | 90.9% | 40.6% |
| 5011659 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 42.0 | 4.33e-01 | 92.6% | 96.5% |
| 4013939 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 38.0 | 3.45e-01 | 79.3% | 65.5% |
D2
high
residues 135-183
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lqlA01 | 1.10.287.2900 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 34.0 | 3.77e-01 | 79.6% | 74.4% |