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MK562503.1__QBP32911.1__HRP29_gp11__00011

Bact-Vir

MK562503.1__QBP32911.1__HRP29_gp11__00011

Identity

Accession:
MK562503 ↗
Kingdom:
phage

Quality

60.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Bucovirus› Shigella_phage_Buco

TaxID: 2530183

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 141-210
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.77 58.0 4.75e-01 98.6% 45.8%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 49.0 4.03e-01 100.0% 38.2%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.74 59.0 4.74e-01 97.1% 44.3%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 46.0 4.08e-01 74.3% 49.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 50.0 4.11e-01 80.0% 88.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 47.0 4.12e-01 81.4% 51.0%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 4.63e-01 98.6% 94.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.65 51.0 4.15e-01 87.1% 46.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.65 51.0 4.23e-01 100.0% 46.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.65 46.0 4.45e-01 87.1% 66.3%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 46.0 4.26e-01 77.1% 75.6%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 42.0 3.63e-01 70.0% 47.8%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 46.0 4.32e-01 78.6% 80.0%
1qmnA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 42.0 3.37e-01 71.4% 67.9%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 42.0 3.70e-01 74.3% 49.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 41.0 3.89e-01 92.9% 57.0%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 47.0 3.82e-01 87.1% 50.3%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 40.0 3.69e-01 72.9% 51.6%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 44.0 3.60e-01 81.4% 41.3%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 43.0 3.44e-01 75.7% 60.3%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 38.0 3.61e-01 78.6% 54.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.78e-01 87.1% 78.8%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.59 48.0 4.23e-01 92.9% 60.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.62e-01 94.3% 48.6%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 43.0 2.87e-01 81.4% 27.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 43.0 3.59e-01 82.9% 46.2%
1uurA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 49.0 4.02e-01 97.1% 83.5%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.61e-01 94.3% 50.5%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 42.0 3.42e-01 80.0% 44.7%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.35e-01 92.9% 65.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 41.0 4.15e-01 87.1% 78.9%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 39.0 3.17e-01 72.9% 51.1%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.02e-01 98.6% 40.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.55 39.0 3.04e-01 77.1% 34.7%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 35.0 3.64e-01 74.3% 70.3%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 2.97e-01 94.3% 86.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.06e-01 92.9% 43.4%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 3.45e-01 74.3% 89.9%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 39.0 2.88e-01 80.0% 74.2%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 2.86e-01 75.7% 84.8%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.21e-01 87.1% 87.1%
4dzoA02 3.30.457.60 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.52 43.0 4.19e-01 90.0% 84.4%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 3.65e-01 84.3% 94.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 3.40e-01 88.6% 88.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.52 40.0 3.51e-01 87.1% 76.3%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.23e-01 91.4% 82.1%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 39.0 3.37e-01 81.4% 91.7%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 47.0 3.52e-01 98.6% 51.6%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 35.0 3.15e-01 72.9% 97.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.80 63.0 4.74e-01 82.9% 38.7%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.73 57.0 4.35e-01 84.3% 38.1%
3931156 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 49.0 4.96e-01 74.3% 77.1%
3214705 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.68 50.0 4.19e-01 80.0% 45.8%
3716329 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 56.0 4.34e-01 97.1% 40.0%
3542914 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 48.0 4.02e-01 81.4% 45.0%
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 48.0 4.02e-01 75.7% 47.8%
4985600 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.63 43.0 4.10e-01 75.7% 61.3%
3930399 4075.1.1.0 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain 0.63 47.0 4.23e-01 80.0% 85.9%
3255777 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.63 47.0 4.27e-01 80.0% 87.4%
3589473 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 44.0 4.25e-01 74.3% 65.0%
136506 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.62 46.0 4.14e-01 81.4% 86.9%
3873956 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 47.0 3.91e-01 98.6% 48.3%
5007420 2484.1.1.333 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.61 43.0 3.29e-01 74.3% 60.6%
4012071 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 2.97e-01 84.3% 16.5%
3930059 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.60 44.0 3.78e-01 77.1% 96.4%
3211478 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 51.0 4.34e-01 98.6% 79.2%
3789341 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 52.0 3.35e-01 100.0% 61.8%
4965528 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 47.0 3.42e-01 92.9% 36.9%
3839222 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 40.0 3.30e-01 74.3% 36.4%
3624447 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 48.0 4.16e-01 91.4% 84.5%
4927967 2003.1.2.297 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.58 42.0 2.56e-01 80.0% 13.2%
4065004 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 41.0 3.50e-01 72.9% 67.3%
3865191 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.58 40.0 3.54e-01 91.4% 47.3%
3707978 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.58 46.0 3.35e-01 87.1% 59.5%
5024507 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 48.0 3.06e-01 92.9% 84.1%
3949336 220.1.1.216 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.57 43.0 3.81e-01 84.3% 52.7%
4323683 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.57 51.0 4.39e-01 98.6% 63.6%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 45.0 4.39e-01 87.1% 100.0%
3316055 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.36e-01 97.1% 44.7%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 4.28e-01 78.6% 85.0%
4121439 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.57 46.0 2.89e-01 88.6% 71.7%
154344 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.57 42.0 3.69e-01 94.3% 51.4%
4200272 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 39.0 3.63e-01 72.9% 68.9%
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.56 42.0 4.11e-01 82.9% 83.7%
5031433 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 37.0 3.38e-01 78.6% 49.0%
3916003 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.55 38.0 3.34e-01 87.1% 45.2%
3407322 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.55 40.0 3.62e-01 78.6% 73.0%
4353121 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 39.0 3.46e-01 72.9% 77.0%
3495949 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 40.0 3.69e-01 77.1% 60.0%
3479464 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.93e-01 92.9% 65.2%
4488977 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 46.0 3.67e-01 94.3% 46.4%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.54 40.0 4.02e-01 78.6% 78.6%
4028484 7.1.1.7 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 0.54 42.0 3.45e-01 90.0% 85.5%
4984579 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 46.0 2.80e-01 94.3% 48.7%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.54 38.0 4.03e-01 74.3% 90.0%
4015135 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 47.0 3.15e-01 100.0% 88.2%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 4.02e-01 82.9% 84.6%
3602410 604.1.1.235 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27233 0.53 49.0 3.25e-01 100.0% 35.8%
3597563 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.32e-01 88.6% 45.6%
3276895 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.82e-01 95.7% 94.1%
5034090 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 46.0 3.45e-01 92.9% 88.4%
4968479 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.52 42.0 3.08e-01 91.4% 38.0%
4320111 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 37.0 3.34e-01 75.7% 71.0%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 3.04e-01 100.0% 45.8%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 3.35e-01 95.7% 47.5%
D2 medium residues 1-131
PDB