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MK562503.1__QBP32921.1__HRP29_gp21__00021

Bact-Vir

MK562503.1__QBP32921.1__HRP29_gp21__00021

Identity

Accession:
MK562503 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Bucovirus› Shigella_phage_Buco

TaxID: 2530183

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-66
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.07e-01 100.0% 79.4%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 64.0 6.26e-01 100.0% 90.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 5.87e-01 100.0% 80.0%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 61.0 5.59e-01 98.3% 74.0%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 59.0 5.84e-01 100.0% 91.8%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.70 53.0 4.83e-01 100.0% 62.3%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 50.0 5.35e-01 100.0% 93.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 60.0 5.84e-01 100.0% 98.5%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 62.0 6.04e-01 100.0% 89.4%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.95e-01 100.0% 93.4%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 55.0 5.72e-01 100.0% 98.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.80e-01 100.0% 90.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.60e-01 100.0% 84.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.93e-01 100.0% 92.2%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 59.0 5.73e-01 100.0% 91.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.66 52.0 5.23e-01 100.0% 87.9%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.83e-01 100.0% 71.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 5.06e-01 100.0% 83.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.81e-01 98.3% 79.7%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 57.0 5.47e-01 100.0% 91.2%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.84e-01 100.0% 93.6%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.73e-01 100.0% 70.8%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.64 53.0 5.22e-01 100.0% 88.9%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.45e-01 94.9% 66.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.78e-01 100.0% 87.1%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 42.0 4.01e-01 76.3% 85.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 3.90e-01 91.5% 78.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 4.35e-01 83.1% 91.8%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.58 40.0 3.66e-01 74.6% 53.7%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 4.09e-01 91.5% 90.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.41e-01 100.0% 87.9%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.87e-01 91.5% 92.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 39.0 2.64e-01 76.3% 57.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.44e-01 96.6% 48.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.56 47.0 4.46e-01 100.0% 79.7%
3g12B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 41.0 3.34e-01 81.4% 79.6%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 40.0 3.28e-01 79.7% 98.2%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 39.0 3.65e-01 79.7% 60.8%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.67e-01 100.0% 98.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.65e-01 74.6% 78.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 40.0 3.87e-01 91.5% 71.6%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.52e-01 94.9% 92.7%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.53 41.0 3.99e-01 89.8% 90.0%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.06e-01 96.6% 61.2%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 3.08e-01 94.9% 79.7%
1r8oB01 2.30.30.480 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.59e-01 74.6% 84.8%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.51e-01 86.4% 79.2%
6b4oA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.54e-01 98.3% 94.9%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.81e-01 86.4% 74.6%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.52 37.0 3.94e-01 76.3% 100.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.52 37.0 3.90e-01 76.3% 100.0%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 39.0 3.90e-01 84.7% 85.2%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 35.0 3.60e-01 89.8% 79.6%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.55e-01 93.2% 31.6%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 39.0 3.13e-01 88.1% 80.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 38.0 3.73e-01 84.7% 83.6%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 40.0 3.43e-01 100.0% 96.6%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 67.0 6.60e-01 100.0% 92.1%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.75 58.0 4.39e-01 100.0% 36.3%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 59.0 5.76e-01 100.0% 78.5%
4951012 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.74 52.0 5.55e-01 100.0% 88.0%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 52.0 5.55e-01 100.0% 90.0%
3479350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 62.0 5.46e-01 100.0% 64.7%
4957377 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.72 51.0 5.00e-01 100.0% 69.8%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 63.0 5.44e-01 100.0% 63.3%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 63.0 6.27e-01 100.0% 95.0%
3554994 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 62.0 5.39e-01 100.0% 62.9%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 62.0 5.91e-01 100.0% 81.4%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.72 63.0 6.13e-01 100.0% 89.2%
3554293 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 61.0 5.97e-01 100.0% 86.2%
1821014 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.72 63.0 6.15e-01 100.0% 90.6%
3290564 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.72 64.0 5.57e-01 100.0% 72.2%
3496355 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 59.0 6.10e-01 96.6% 96.4%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.71 60.0 4.03e-01 100.0% 25.0%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.71 61.0 4.86e-01 100.0% 48.7%
3879164 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.71 62.0 5.70e-01 100.0% 76.0%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 60.0 4.90e-01 100.0% 50.9%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 59.0 5.64e-01 100.0% 80.0%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 4.87e-01 100.0% 65.7%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 64.0 6.03e-01 100.0% 87.1%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 6.17e-01 100.0% 93.8%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.76e-01 100.0% 81.4%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 5.42e-01 100.0% 65.6%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.75e-01 100.0% 86.7%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.73e-01 100.0% 81.3%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 62.0 6.04e-01 100.0% 90.8%
3210707 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 6.18e-01 100.0% 98.3%
3561094 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 62.0 5.70e-01 100.0% 81.3%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.69 55.0 5.24e-01 100.0% 74.6%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.04e-01 100.0% 73.8%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 59.0 5.93e-01 100.0% 95.0%
5050716 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 59.0 4.52e-01 100.0% 42.2%
3999508 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.81e-01 100.0% 84.3%
4038705 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 61.0 5.95e-01 100.0% 96.9%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.34e-01 100.0% 94.0%
4995669 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 59.0 5.52e-01 100.0% 93.3%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 61.0 5.91e-01 100.0% 90.8%
3999846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 60.0 5.52e-01 100.0% 78.7%
3660964 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.66 51.0 4.39e-01 100.0% 51.0%
3887433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.70e-01 100.0% 97.4%
3227565 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 5.72e-01 96.6% 95.0%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 58.0 5.67e-01 100.0% 93.8%
3210653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.55e-01 93.2% 67.7%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 58.0 5.67e-01 100.0% 95.4%
3635127 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.65 52.0 5.22e-01 100.0% 88.3%
2561577 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 45.0 4.48e-01 100.0% 72.1%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.81e-01 100.0% 74.3%
3406633 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 55.0 4.69e-01 100.0% 70.0%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.63 51.0 5.00e-01 100.0% 86.2%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.32e-01 100.0% 98.5%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.49e-01 100.0% 66.7%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.62 47.0 4.28e-01 100.0% 58.8%
3613205 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 52.0 3.49e-01 100.0% 29.4%
4994895 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.61 53.0 4.83e-01 100.0% 77.5%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.57 50.0 3.91e-01 100.0% 53.8%
3586562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 49.0 4.39e-01 100.0% 72.9%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.30e-01 100.0% 91.3%
4881988 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 42.0 3.93e-01 86.4% 96.2%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.54 40.0 3.45e-01 86.4% 85.5%
3608681 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.52 41.0 2.54e-01 91.5% 32.2%