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MK562503.1__QBP32952.1__HRP29_gp52__00052

Bact-Vir

MK562503.1__QBP32952.1__HRP29_gp52__00052

Identity

Accession:
MK562503 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Bucovirus› Shigella_phage_Buco

TaxID: 2530183

Cluster

View cluster (41 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 437-507
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21519.3 best Tailspike_C 28.7 1.50e-06 98.6% 91.7%
CATH (82)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.98 93.0 5.34e-01 100.0% 13.7%
4mtmA01 2.60.40.3940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.72 62.0 5.72e-01 100.0% 80.2%
6sl4A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.71 61.0 4.85e-01 100.0% 61.3%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.68 56.0 5.38e-01 94.4% 83.5%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.68 59.0 4.76e-01 100.0% 58.9%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 58.0 5.38e-01 98.6% 83.9%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.67 57.0 4.37e-01 100.0% 75.6%
5tfmA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.66 57.0 5.19e-01 100.0% 82.7%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 55.0 5.20e-01 98.6% 77.5%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 56.0 4.47e-01 100.0% 54.5%
8d40A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.65 55.0 4.96e-01 100.0% 81.7%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.64 55.0 4.83e-01 100.0% 66.4%
4fkeA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.64 54.0 3.93e-01 100.0% 34.5%
1tg7A02 2.102.20.10 Mainly Beta › 3-layer Sandwich › beta-galactosidase, domain 2 › Beta-galactosidase, domain 2 0.63 48.0 3.57e-01 90.1% 32.0%
5dzvA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.62 52.0 4.71e-01 100.0% 79.4%
7sz8A02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.62 53.0 4.91e-01 100.0% 85.3%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 52.0 4.57e-01 100.0% 100.0%
5jpnC01 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.62 53.0 4.44e-01 100.0% 59.4%
2rikA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 53.0 4.83e-01 100.0% 81.2%
3b43A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.80e-01 100.0% 79.4%
2x9zA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 4.18e-01 100.0% 56.4%
4n2oA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 3.90e-01 100.0% 48.2%
1ayoA00 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.61 52.0 4.38e-01 100.0% 58.5%
2wcoA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.61 47.0 4.17e-01 100.0% 55.7%
2ee0A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 50.0 4.55e-01 95.8% 80.0%
1vcaA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.85e-01 100.0% 84.3%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.60 49.0 3.99e-01 95.8% 74.8%
6vg1A03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 51.0 4.67e-01 100.0% 83.2%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 51.0 4.38e-01 100.0% 68.9%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 4.23e-01 100.0% 56.0%
3mpcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.71e-01 100.0% 72.9%
4ak1A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.73e-01 100.0% 81.3%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.60 44.0 4.61e-01 100.0% 90.6%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 4.67e-01 100.0% 85.6%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.45e-01 98.6% 84.1%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 52.0 4.44e-01 100.0% 89.2%
4mboA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 49.0 4.03e-01 100.0% 65.0%
2ww8A02 2.60.40.2110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 51.0 3.82e-01 100.0% 51.0%
2cqvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.44e-01 100.0% 68.4%
1e5bA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 50.0 4.75e-01 100.0% 97.7%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 50.0 4.81e-01 100.0% 96.5%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.44e-01 100.0% 67.6%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.38e-01 95.8% 70.2%
2wp3O00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 50.0 4.60e-01 100.0% 80.4%
2e9wA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 49.0 4.62e-01 100.0% 80.2%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 43.0 3.75e-01 81.7% 76.7%
4lk4A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 4.24e-01 95.8% 82.9%
3q2wA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 49.0 4.41e-01 100.0% 80.0%
4frwA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.50e-01 98.6% 80.2%
1nctA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 49.0 4.50e-01 100.0% 78.6%
5vt8D02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.57 48.0 4.41e-01 100.0% 80.8%
2e7cA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.34e-01 100.0% 79.0%
5dzxA04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 48.0 4.31e-01 100.0% 78.8%
1gl4B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.44e-01 100.0% 83.1%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 47.0 3.65e-01 100.0% 96.6%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 45.0 3.24e-01 95.8% 66.4%
4liqE04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.31e-01 100.0% 82.7%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.56 47.0 4.03e-01 98.6% 58.2%
2nv4A00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.56 46.0 3.90e-01 98.6% 88.6%
2a38A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.30e-01 100.0% 80.2%
3l4yA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 44.0 3.70e-01 94.4% 55.8%
2cpcA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.36e-01 98.6% 87.4%
3ejjX02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.22e-01 100.0% 74.7%
3dalA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 43.0 3.34e-01 91.5% 59.2%
1sppB00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.54 45.0 4.02e-01 100.0% 84.8%
3ehkA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 47.0 3.39e-01 100.0% 40.8%
3kglB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.34e-01 100.0% 37.7%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.54 39.0 3.89e-01 78.9% 97.2%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.53 44.0 3.20e-01 100.0% 44.7%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 4.02e-01 100.0% 67.9%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 44.0 3.52e-01 95.8% 60.0%
2e5eA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.86e-01 94.4% 80.2%
7fcbC01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 44.0 3.11e-01 100.0% 42.5%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.82e-01 100.0% 91.3%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 44.0 3.25e-01 100.0% 47.7%
1uctA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.09e-01 100.0% 78.0%
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 33.0 3.15e-01 78.9% 52.9%
7ok5A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 4.03e-01 100.0% 84.1%
3x27A01 2.40.100.20 Mainly Beta › Beta Barrel › Cyclophilin › 0.51 42.0 3.41e-01 95.8% 71.6%
3r4dA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.01e-01 100.0% 81.5%
1gqgC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.28e-01 100.0% 43.4%
2opwA00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.50 41.0 2.90e-01 100.0% 44.4%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184925 11.21.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › Tailspike_C 0.98 93.0 9.22e-01 100.0% 95.9%
5081149 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.78 69.0 6.96e-01 97.2% 100.0%
4010284 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.74 65.0 5.76e-01 100.0% 73.1%
3582449 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 62.0 6.22e-01 100.0% 95.9%
5076974 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.69 59.0 5.44e-01 100.0% 74.4%
5042048 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.68 58.0 4.22e-01 100.0% 33.3%
2527699 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.68 57.0 4.15e-01 100.0% 33.7%
3960974 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.68 58.0 4.20e-01 100.0% 33.7%
3714611 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.68 59.0 5.83e-01 100.0% 93.3%
5053995 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.68 50.0 4.98e-01 100.0% 76.0%
3741774 5046.1.1.0 ↗ extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b 0.67 57.0 5.27e-01 97.2% 94.7%
3928310 11.1.1.588 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.67 55.0 5.03e-01 91.5% 76.8%
3605691 11.1.5.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.67 58.0 5.02e-01 100.0% 67.0%
3705988 929.1.1.0 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.67 55.0 5.56e-01 100.0% 94.3%
3625346 11.1.1.588 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C 0.66 58.0 4.86e-01 100.0% 64.0%
4984453 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.66 56.0 4.11e-01 100.0% 34.9%
3916293 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 57.0 5.05e-01 100.0% 74.3%
3395363 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.65 56.0 4.94e-01 100.0% 77.3%
3495425 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.65 56.0 4.93e-01 100.0% 80.0%
3286177 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.64 54.0 3.99e-01 100.0% 34.5%
3227673 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.64 55.0 4.05e-01 100.0% 36.6%
3247478 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.70e-01 98.6% 65.8%
3542431 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.64 54.0 4.89e-01 100.0% 80.0%
3879337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 5.12e-01 100.0% 82.2%
5018095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 4.59e-01 95.8% 66.7%
4943501 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 54.0 4.85e-01 100.0% 74.3%
5044775 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 54.0 4.85e-01 100.0% 92.4%
8624 929.1.1.1 ↗ beta duplicates or obligate multimers › Resistin › Resistin › Resistin › Resistin 0.63 45.0 4.29e-01 100.0% 62.9%
3503656 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 54.0 3.74e-01 100.0% 29.1%
3500074 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 54.0 4.85e-01 100.0% 80.0%
4940848 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 51.0 4.94e-01 100.0% 81.2%
3388770 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.62 53.0 5.02e-01 100.0% 85.6%
3512122 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 53.0 4.05e-01 100.0% 38.9%
4954927 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 53.0 4.22e-01 100.0% 48.4%
3486454 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.75e-01 100.0% 80.0%
3490467 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.62 52.0 4.63e-01 100.0% 78.2%
3747178 11.1.1.969 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TRAPPC10 0.62 52.0 4.37e-01 100.0% 59.3%
5070547 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 53.0 4.94e-01 98.6% 82.2%
3221772 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.61 52.0 4.83e-01 100.0% 81.1%
3504718 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.61 52.0 4.87e-01 100.0% 85.6%
3591505 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.82e-01 100.0% 82.2%
3630500 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.60 51.0 4.56e-01 100.0% 84.5%
1178821 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 51.0 4.23e-01 100.0% 56.0%
3764703 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.21e-01 100.0% 54.4%
3265682 10.32.1.255 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF28714 0.60 51.0 3.84e-01 100.0% 39.5%
3596917 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.60 49.0 3.97e-01 93.0% 56.6%
3737544 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.43e-01 100.0% 82.6%
1236190 11.1.5.45 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GramPos_pilinBB 0.60 51.0 4.08e-01 100.0% 55.2%
3590148 11.1.5.53 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GBS104-like_Ig 0.60 51.0 3.79e-01 100.0% 37.0%
3575562 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 50.0 4.61e-01 100.0% 78.0%
3784415 11.1.1.151 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Candida_ALS_N 0.59 48.0 3.92e-01 95.8% 74.8%
3936983 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 50.0 4.05e-01 98.6% 81.3%
3923830 11.1.5.27 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › A2M_recep 0.59 50.0 4.08e-01 100.0% 52.7%
3928736 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 51.0 4.36e-01 100.0% 64.7%
4932258 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.34e-01 100.0% 86.1%
3503687 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 50.0 4.64e-01 100.0% 82.1%
3481360 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.59 51.0 4.06e-01 100.0% 49.0%
1758410 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.56e-01 100.0% 83.5%
3994155 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 50.0 4.19e-01 100.0% 59.2%
4215475 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.58 49.0 2.86e-01 97.2% 18.2%
3912840 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.58 49.0 4.41e-01 100.0% 81.9%
4941111 11.1.1.75 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › He_PIG 0.58 49.0 4.55e-01 100.0% 78.9%
3574277 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.57 48.0 4.64e-01 100.0% 91.8%
5037245 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 46.0 3.34e-01 91.5% 63.1%
3485746 12.2.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › UPF0556 0.57 48.0 4.08e-01 100.0% 60.0%
3245736 10.4.1.19 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein 0.57 46.0 4.26e-01 100.0% 90.5%
3989692 4081.1.1.12 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.57 47.0 3.53e-01 100.0% 34.3%
3779084 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.56 47.0 4.46e-01 100.0% 82.2%
3707132 4178.1.1.1 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.56 47.0 3.83e-01 97.2% 56.6%
5039993 12.3.1.40 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.56 45.0 3.31e-01 90.1% 64.4%
4927084 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.43e-01 98.6% 85.9%
4604481 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 45.0 3.33e-01 100.0% 75.8%
3639075 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 43.0 3.75e-01 87.3% 81.7%
4210849 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.55 43.0 4.07e-01 85.9% 90.6%
3528111 10.21.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.55 47.0 4.01e-01 100.0% 84.0%
3411013 12.5.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.55 46.0 3.76e-01 100.0% 60.7%
3897497 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.22e-01 98.6% 77.6%
3882607 11.1.1.860 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CLSTN_C 0.54 45.0 2.73e-01 100.0% 17.6%
3247603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.35e-01 95.8% 96.9%
3893575 11.1.1.860 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CLSTN_C 0.53 44.0 3.56e-01 100.0% 61.2%
4969783 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 45.0 3.02e-01 100.0% 25.7%
D2 medium residues 32-84_96-153
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.88 84.0 5.23e-01 99.1% 22.3%
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 76.0 5.06e-01 98.2% 33.2%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 76.0 5.79e-01 99.1% 59.3%
5olpA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 74.0 4.78e-01 100.0% 38.7%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 74.0 4.75e-01 100.0% 39.0%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 73.0 4.73e-01 99.1% 32.5%
1h80B00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 72.0 4.71e-01 100.0% 34.4%
2bvfA01 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.60 25.0 2.98e-01 85.6% 53.2%
4hutA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 3.64e-01 98.2% 46.6%
1k7hA00 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 46.0 3.03e-01 91.9% 51.3%
8sfuB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 43.0 3.35e-01 87.4% 90.1%
5wabD02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.53 45.0 3.52e-01 91.9% 73.1%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.69e-01 86.5% 76.7%
4p7oB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 41.0 2.94e-01 85.6% 52.0%
2prsA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.50 34.0 3.45e-01 86.5% 68.4%
2c4kA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 45.0 3.95e-01 99.1% 83.2%
1ea0A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 44.0 3.12e-01 98.2% 50.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
339124 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.89 84.0 5.39e-01 99.1% 26.0%
4855553 207.2.1.94 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim 0.82 77.0 5.29e-01 99.1% 37.4%
4446517 207.2.1.21 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.82 78.0 5.14e-01 100.0% 32.7%
4527582 207.2.1.76 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.81 77.0 5.07e-01 99.1% 32.5%
1121177 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.80 76.0 5.79e-01 99.1% 59.3%
2139004 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.78 74.0 4.79e-01 100.0% 38.7%
3587303 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.78 73.0 4.68e-01 98.2% 30.9%
377410 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.78 74.0 4.74e-01 100.0% 38.8%
4996332 2002.1.1.236 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.62 34.0 2.91e-01 86.5% 33.7%
4927503 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.52 34.0 3.19e-01 92.8% 50.7%
3956281 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 41.0 3.03e-01 82.9% 93.8%
5026283 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.51 32.0 3.02e-01 91.9% 50.4%
5072005 7512.1.1.30 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.51 44.0 3.52e-01 97.3% 79.9%
3386982 2004.1.1.343 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_14 0.51 33.0 3.27e-01 86.5% 60.0%
5036751 7573.1.1.2 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.50 45.0 4.11e-01 99.1% 94.5%