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MK562505.1__QBP33214.1__Silverhawkium_gp128__00127

Bact-Vir

MK562505.1__QBP33214.1__Silverhawkium_gp128__00127

Identity

Accession:
MK562505 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Mooglevirus› Shigella_phage_Silverhawkium

TaxID: 2530185

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-102
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 34.0 3.39e-01 95.0% 45.8%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.65 41.0 4.16e-01 86.0% 64.0%
5xrwC00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.63 29.0 3.28e-01 77.0% 53.8%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 31.0 3.26e-01 84.0% 50.0%
5xrwA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.62 29.0 3.26e-01 78.0% 54.4%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 32.0 3.52e-01 76.0% 72.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.71e-01 97.0% 96.4%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 26.0 3.34e-01 84.0% 89.8%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.52 25.0 3.25e-01 82.0% 86.3%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.52 39.0 3.58e-01 94.0% 61.4%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 3.39e-01 71.0% 77.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037792 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.71 35.0 3.77e-01 87.0% 54.1%
4990333 3613.1.1.0 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain 0.70 37.0 3.31e-01 87.0% 37.1%
3574784 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 35.0 3.46e-01 90.0% 47.3%
5051893 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.61 32.0 3.56e-01 85.0% 61.3%
5077063 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.60 33.0 3.67e-01 85.0% 68.0%
3247984 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.58 31.0 3.46e-01 83.0% 63.7%
4975837 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 31.0 3.29e-01 89.0% 56.7%
4259810 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.57 33.0 3.60e-01 88.0% 70.0%
2869319 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.56 32.0 3.32e-01 85.0% 56.1%
5038467 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 32.0 3.50e-01 83.0% 68.4%
5069292 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.54 38.0 3.69e-01 95.0% 64.3%
3467267 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.50 28.0 3.38e-01 85.0% 84.6%
5049330 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 36.0 3.07e-01 75.0% 50.3%