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MK568540.2__QBX06208.1__Va3_255__00254
Bact-VirMK568540.2__QBX06208.1__Va3_255__00254
Identity
- Accession:
- MK568540 ↗
- Kingdom:
- phage
Quality
46.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Schizotequatrovirus›
Vibrio_phage_Va3
TaxID: 2563734
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 187-260
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 47.0 | 4.91e-01 | 98.6% | 71.0% |
| 2a5hA03 | 6.20.120.40 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 30.0 | 3.23e-01 | 89.2% | 51.6% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 47.0 | 4.65e-01 | 93.2% | 75.6% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 3.26e-01 | 87.8% | 40.8% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.55 | 39.0 | 3.13e-01 | 77.0% | 82.2% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 2.95e-01 | 95.9% | 92.5% |
| 3ot2A00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.54 | 36.0 | 2.77e-01 | 70.3% | 71.5% |
| 1wdjA00 | 3.90.1570.10 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A | 0.54 | 38.0 | 2.88e-01 | 75.7% | 65.6% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.53 | 42.0 | 4.44e-01 | 95.9% | 95.5% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 35.0 | 3.59e-01 | 74.3% | 71.2% |
| 5twbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 3.22e-01 | 98.6% | 86.9% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 39.0 | 3.52e-01 | 93.2% | 58.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484007 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 51.0 | 5.25e-01 | 73.0% | 92.9% |
| 3475807 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.71 | 55.0 | 5.35e-01 | 81.1% | 92.5% |
| 3868320 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.70 | 51.0 | 5.39e-01 | 100.0% | 86.2% |
| 4092289 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.69 | 38.0 | 4.02e-01 | 89.2% | 60.0% |
| 3623333 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.69 | 40.0 | 3.75e-01 | 93.2% | 47.7% |
| 3494765 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.65 | 52.0 | 3.66e-01 | 85.1% | 98.2% |
| 3490807 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.63 | 39.0 | 3.01e-01 | 94.6% | 27.8% |
| 3924338 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.62 | 53.0 | 5.44e-01 | 94.6% | 97.1% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.60 | 56.0 | 5.08e-01 | 98.6% | 77.9% |
| 3899589 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 5.05e-01 | 90.5% | 100.0% |
| 3413864 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.58 | 51.0 | 3.91e-01 | 95.9% | 72.7% |
| 4011907 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 46.0 | 2.92e-01 | 97.3% | 93.6% |
| 3211367 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.54 | 49.0 | 4.60e-01 | 98.6% | 92.2% |
| 4134876 | 4.1.1.334 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 | 0.53 | 47.0 | 3.55e-01 | 95.9% | 56.4% |
| 3496646 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 40.0 | 2.61e-01 | 85.1% | 25.6% |
| 4931772 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.52 | 45.0 | 3.41e-01 | 100.0% | 79.5% |
| 5028587 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.51 | 43.0 | 3.48e-01 | 98.6% | 48.6% |
| 3624498 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 35.0 | 3.10e-01 | 75.7% | 64.0% |
| 3789025 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.50 | 34.0 | 2.88e-01 | 70.3% | 57.8% |
| 4942524 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.50 | 43.0 | 2.75e-01 | 100.0% | 81.7% |
D2
medium
residues 1-62