←Back to structures

MK577502.1__QBX32686.1__Asfd1_60__00060

Bact-Vir

MK577502.1__QBX32686.1__Asfd1_60__00060

Identity

Accession:
MK577502 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Biquartavirus› Aeromonas_phage_Asfd_1

TaxID: 2562462

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-210
PDB
Domain cluster: rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02518.32 best HATPase_c 30.1 7.80e-07 64.6% 89.2%
D2 high residues 354-483
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lkzC01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 41.0 3.02e-01 70.0% 98.1%
3fbtA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 37.0 3.68e-01 70.0% 100.0%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 3.43e-01 86.2% 96.8%
4xsoA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 37.0 3.30e-01 70.8% 75.1%
1qo7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.24e-01 95.4% 94.0%
2fzvA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 45.0 3.78e-01 99.2% 81.7%
3rnlA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.62e-01 95.4% 82.6%
3f67A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 42.0 3.48e-01 90.0% 91.7%
1auoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 43.0 3.65e-01 93.1% 93.6%
3fnbA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 3.52e-01 94.6% 93.6%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3877139 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.61 43.0 3.69e-01 72.3% 91.7%
3875201 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.61 42.0 3.75e-01 71.5% 94.7%
3209545 7579.1.1.58 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.58 47.0 3.66e-01 87.7% 92.9%
3918166 7579.1.1.58 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.57 47.0 3.74e-01 90.0% 92.2%
1669079 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 29.0 3.72e-01 71.5% 92.5%
3274210 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 34.0 3.76e-01 90.8% 77.0%
5035540 2003.1.10.36 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › DUF373 0.56 37.0 3.79e-01 86.2% 67.7%
5050400 2011.1.1.0 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases 0.55 46.0 4.07e-01 90.8% 96.4%
4974956 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 39.0 3.39e-01 71.5% 74.9%
5062531 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 38.0 3.34e-01 71.5% 74.0%
3685373 7579.1.1.92 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, Abhydrolase_6 0.54 45.0 3.15e-01 87.7% 91.2%
185531 7597.1.1.2 ↗ a/b three-layered sandwiches › Endolysin C-terminal domain › Endolysin C-terminal domain › Endolysin C-terminal domain › GxGYxYP_N 0.54 37.0 4.18e-01 90.8% 95.9%
3927334 2005.1.1.13 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.53 43.0 4.09e-01 87.7% 87.1%
3283591 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.53 42.0 3.28e-01 86.2% 91.9%
4016666 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 43.0 4.14e-01 89.2% 88.7%
4001472 2004.1.1.101 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MeaB 0.50 41.0 2.98e-01 86.9% 67.5%
3462756 7579.1.1.55 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1350 0.50 39.0 3.69e-01 82.3% 72.5%
4456550 2004.1.1.101 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MeaB 0.50 41.0 3.10e-01 87.7% 70.2%
D3 high residues 493-588
PDB
Domain cluster: rep: MW598459.1__UGL59843.1__X__00027__D84-169
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2h6cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 34.0 3.08e-01 85.4% 37.2%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 45.0 3.38e-01 71.9% 96.1%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 30.0 3.32e-01 87.5% 66.2%
3wy1A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 37.0 2.48e-01 71.9% 93.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 28.0 3.01e-01 87.5% 61.3%
2dh2A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 37.0 2.59e-01 77.1% 92.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3211717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 24.0 3.59e-01 72.9% 82.9%
5039515 2002.1.1.43 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.61 42.0 3.16e-01 71.9% 89.2%
3726614 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.56 50.0 3.28e-01 100.0% 38.4%
3726852 2004.1.1.685 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HET 0.56 50.0 3.73e-01 100.0% 65.6%
4566976 375.14.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.52 24.0 3.34e-01 74.0% 97.5%
3602943 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 26.0 3.27e-01 76.0% 88.0%
3501768 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.50 32.0 3.70e-01 93.8% 90.0%
D4 high residues 599-708
PDB
D5 medium residues 225-349
PDB
Domain cluster: rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00035__D226-373
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5bB03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.67 48.0 4.58e-01 74.4% 68.5%
4ipeB02 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.57 49.0 4.49e-01 95.2% 87.3%
1y6zA01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 48.0 4.49e-01 95.2% 87.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957148 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.75 53.0 4.53e-01 73.6% 55.0%
5044842 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.70 51.0 4.18e-01 74.4% 52.3%
5037280 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.69 51.0 4.30e-01 76.0% 55.1%
3487862 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.62 48.0 3.86e-01 80.8% 84.6%
2323907 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.62 48.0 3.91e-01 80.8% 88.1%
3869716 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.62 47.0 4.46e-01 80.0% 82.7%
4661396 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.59 50.0 4.12e-01 91.2% 81.8%
3169604 2004.1.1.495 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TRAPPC10_1st 0.58 51.0 4.20e-01 96.8% 97.8%