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MK577502.1__QBX32745.1__Asfd1_119__00119

Bact-Vir

MK577502.1__QBX32745.1__Asfd1_119__00119

Identity

Accession:
MK577502 ↗
Kingdom:
phage

Quality

64.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Biquartavirus› Aeromonas_phage_Asfd_1

TaxID: 2562462

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 104-182
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qvnA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.72 45.0 3.96e-01 70.9% 42.7%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.68 42.0 3.63e-01 70.9% 39.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.94e-01 81.0% 94.4%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.64 50.0 4.10e-01 83.5% 51.0%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 43.0 2.84e-01 72.2% 89.4%
4dyoA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.61 48.0 4.02e-01 84.8% 97.1%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.60 49.0 3.51e-01 91.1% 100.0%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 44.0 3.52e-01 81.0% 90.1%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 46.0 3.77e-01 88.6% 92.8%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 44.0 3.71e-01 84.8% 73.0%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 48.0 4.11e-01 94.9% 76.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.56 44.0 4.71e-01 91.1% 100.0%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.03e-01 74.7% 84.8%
3waiA02 2.60.40.3390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 40.0 3.82e-01 75.9% 75.3%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 45.0 3.51e-01 92.4% 46.8%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.55 44.0 4.21e-01 88.6% 86.3%
1wvqA00 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.55 38.0 3.02e-01 70.9% 87.1%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 45.0 3.08e-01 91.1% 48.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 41.0 3.75e-01 79.7% 99.0%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 47.0 4.18e-01 100.0% 72.0%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.65e-01 78.5% 86.3%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 41.0 3.65e-01 86.1% 70.2%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.53 42.0 3.42e-01 88.6% 86.3%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.55e-01 81.0% 80.4%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.55e-01 81.0% 59.3%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 3.43e-01 91.1% 89.7%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.51e-01 78.5% 86.7%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.68e-01 98.7% 77.6%
3m4rA01 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.52 43.0 3.37e-01 98.7% 98.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 43.0 3.76e-01 92.4% 85.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 36.0 2.60e-01 72.2% 88.7%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.45e-01 92.4% 82.7%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.52 40.0 3.65e-01 86.1% 91.8%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.91e-01 82.3% 92.5%
4gkpB00 3.40.850.20 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › 0.52 41.0 2.97e-01 91.1% 50.4%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.48e-01 84.8% 83.7%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.51e-01 98.7% 91.8%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 45.0 4.04e-01 100.0% 95.5%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 39.0 2.69e-01 89.9% 22.6%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 39.0 3.04e-01 86.1% 88.1%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 43.0 3.70e-01 96.2% 85.5%
1flkA00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 43.0 3.23e-01 94.9% 80.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.63e-01 83.5% 88.8%
1lb6A00 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.50 38.0 3.14e-01 83.5% 81.3%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 40.0 3.40e-01 92.4% 83.0%
3ihpA03 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 35.0 2.42e-01 75.9% 71.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3489385 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.20e-01 83.5% 51.2%
3321071 101.1.2.115 ↗ alpha arrays › HTH › HTH › winged helix domain › CDC27 0.64 49.0 4.08e-01 83.5% 48.6%
3495740 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.62 43.0 3.28e-01 72.2% 80.5%
3218726 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.62 48.0 4.43e-01 82.3% 99.0%
4022609 101.1.2.115 ↗ alpha arrays › HTH › HTH › winged helix domain › CDC27 0.61 43.0 3.54e-01 83.5% 41.3%
3283885 10.12.1.3 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.60 46.0 3.55e-01 82.3% 53.3%
5013669 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 4.45e-01 81.0% 100.0%
3921165 4004.1.1.0 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.60 53.0 4.29e-01 98.7% 91.3%
3403394 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.60 43.0 3.41e-01 77.2% 92.9%
5012604 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.59 47.0 3.53e-01 89.9% 38.1%
3715676 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 4.13e-01 86.1% 73.3%
3674426 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 39.0 2.92e-01 74.7% 79.1%
3808195 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 41.0 2.74e-01 79.7% 42.4%
3903752 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.84e-01 84.8% 81.0%
4972027 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.80e-01 83.5% 83.8%
5027371 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 40.0 3.15e-01 81.0% 36.7%
4294583 10.2.1.31 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin 0.54 42.0 3.69e-01 84.8% 95.8%
4794127 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 40.0 3.68e-01 81.0% 76.2%
3849943 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 39.0 3.30e-01 81.0% 93.8%
4368632 10.32.1.266 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GldH_lipo 0.52 44.0 3.78e-01 98.7% 90.6%
3996015 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.70e-01 84.8% 84.8%
3888070 11.10.1.4 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › TRAF-mep_MATH 0.52 39.0 3.06e-01 83.5% 83.8%
3390499 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 42.0 3.57e-01 92.4% 80.0%
5065716 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.52e-01 83.5% 80.9%
4547125 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.51 27.0 3.20e-01 72.2% 76.0%
3846579 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.51 40.0 3.22e-01 87.3% 81.8%
4655959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.55e-01 81.0% 80.0%
3398695 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 39.0 2.99e-01 84.8% 39.9%
4862306 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.50 41.0 3.43e-01 88.6% 77.2%
3636807 1.1.5.30 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.50 40.0 2.80e-01 88.6% 84.2%
D2 medium residues 1-47_51-95
PDB